{
    "type": "genome",
    "identifier": "GCA_024690085.1",
    "organism": "Butyrivibrio sp.",
    "title": "Butyrivibrio sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Baqiyatallah University of Medical Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024690085.1",
        "bioproject": "PRJNA746430",
        "biosample": "SAMN20246740",
        "wgs_master": "JAILCY000000000.1",
        "refseq_category": "na",
        "taxid": "28121",
        "species_taxid": "28121",
        "organism_name": "Butyrivibrio sp.",
        "infraspecific_name": "",
        "isolate": "RUI006",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/15",
        "asm_name": "ASM2469008v1",
        "submitter": "Baqiyatallah University of Medical Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/690/085/GCA_024690085.1_ASM2469008v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-15",
    "dateModified": "2022-08-15",
    "datePublished": "2022-08-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Butyrivibrio sp."
        ],
        "sample_taxid": [
            "28121"
        ],
        "sample_host_organism": [
            "camel"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iran: Karaj"
        ],
        "sample_host_location_id": [],
        "data_size": "0.772 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 76.27,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2686007",
        "Number of Sequences": "247",
        "Longest Sequences (bp)": "79672",
        "N50 (bp)": "16612",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.1",
        "Number of CDSs": "2308",
        "Average Protein Length": "320.8",
        "Coding Ratio (%)": "82.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Butyrivibrio hungatei",
                "strain": "strain=DSM 14810",
                "accession": "GCA_900143205.1",
                "taxid": 185008,
                "species_taxid": 185008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0107,
                "matched_fragments": 196,
                "total_fragments": 775,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio proteoclasticus",
                "strain": "strain=B316",
                "accession": "GCA_000145035.1",
                "taxid": 43305,
                "species_taxid": 43305,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6504,
                "matched_fragments": 180,
                "total_fragments": 775,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio fibrisolvens",
                "strain": "strain=DSM 3071",
                "accession": "GCA_900129945.1",
                "taxid": 831,
                "species_taxid": 831,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.1481,
                "matched_fragments": 90,
                "total_fragments": 775,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 76.27,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900101605.1",
                "gtdb_species": "s__Butyrivibrio hungatei_B",
                "ani": 96.9144,
                "matched_fragments": 660,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.68",
                "min_intra_species_ani": "97.26",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000424465.1",
                "gtdb_species": "s__Butyrivibrio hungatei_A",
                "ani": 89.4991,
                "matched_fragments": 644,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900116865.1",
                "gtdb_species": "s__Butyrivibrio sp900116865",
                "ani": 88.3213,
                "matched_fragments": 635,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017620235.1",
                "gtdb_species": "s__Butyrivibrio sp017620235",
                "ani": 85.7151,
                "matched_fragments": 516,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000621565.1",
                "gtdb_species": "s__Butyrivibrio sp000621565",
                "ani": 85.4579,
                "matched_fragments": 586,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116875.1",
                "gtdb_species": "s__Butyrivibrio sp900116875",
                "ani": 79.567,
                "matched_fragments": 311,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.12",
                "min_intra_species_ani": "96.12",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016291375.1",
                "gtdb_species": "s__Butyrivibrio sp016291375",
                "ani": 79.5479,
                "matched_fragments": 256,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017433805.1",
                "gtdb_species": "s__Butyrivibrio sp017433805",
                "ani": 79.409,
                "matched_fragments": 159,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003625475.1",
                "gtdb_species": "s__Butyrivibrio sp003625475",
                "ani": 79.3785,
                "matched_fragments": 312,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900108105.1",
                "gtdb_species": "s__Butyrivibrio sp900108105",
                "ani": 79.1751,
                "matched_fragments": 196,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000420945.1",
                "gtdb_species": "s__Butyrivibrio sp000420945",
                "ani": 79.134,
                "matched_fragments": 178,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000420825.1",
                "gtdb_species": "s__Butyrivibrio sp000420825",
                "ani": 78.9553,
                "matched_fragments": 200,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015056685.1",
                "gtdb_species": "s__Butyrivibrio sp015056685",
                "ani": 78.7257,
                "matched_fragments": 184,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
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                "mean_intra_species_ani": "95.83",
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                "status": "-"
            },
            {
                "accession": "GCA_015056585.1",
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                "matched_fragments": 172,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
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            {
                "accession": "GCF_900115735.1",
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                "matched_fragments": 202,
                "total_fragments": 775,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
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                "mean_intra_species_ani": "N/A",
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            {
                "accession": "GCA_017635265.1",
                "gtdb_species": "s__Butyrivibrio sp017635265",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_900102515.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
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                "mean_intra_species_ani": "95.65",
                "min_intra_species_ani": "95.65",
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                "min_intra_species_af": "0.82",
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            },
            {
                "accession": "GCA_017413105.1",
                "gtdb_species": "s__Butyrivibrio sp017413105",
                "ani": 78.2657,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Butyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
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        "doubling_h": null,
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        "optimum_tmp": 37.0,
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        "coding_genes": 2950.0,
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        "tRNA_genes": 48.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Butyrivibrio",
        "s__Butyrivibrio hungatei_B"
    ],
    "_genome_taxon": [
        "Butyrivibrio",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Butyrivibrio",
        "s__Butyrivibrio hungatei_B",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Butyrivibrio",
        "Butyrivibrio",
        "hungatei",
        "B"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}