{
    "type": "genome",
    "identifier": "GCA_024690545.1",
    "organism": "Agathobacter sp.",
    "title": "Agathobacter sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Baqiyatallah University of Medical Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024690545.1",
        "bioproject": "PRJNA746430",
        "biosample": "SAMN20247053",
        "wgs_master": "JAILOZ000000000.1",
        "refseq_category": "na",
        "taxid": "2021311",
        "species_taxid": "2021311",
        "organism_name": "Agathobacter sp.",
        "infraspecific_name": "",
        "isolate": "RUI319",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/15",
        "asm_name": "ASM2469054v1",
        "submitter": "Baqiyatallah University of Medical Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/690/545/GCA_024690545.1_ASM2469054v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-15",
    "dateModified": "2022-08-15",
    "datePublished": "2022-08-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Agathobacter sp."
        ],
        "sample_taxid": [
            "2021311"
        ],
        "sample_host_organism": [
            "camel"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iran: Karaj"
        ],
        "sample_host_location_id": [],
        "data_size": "0.706 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 70.71,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2473730",
        "Number of Sequences": "86",
        "Longest Sequences (bp)": "115740",
        "N50 (bp)": "46537",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.0",
        "Number of CDSs": "2182",
        "Average Protein Length": "341.9",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Agathobacter ruminis",
                "strain": "strain=JK623",
                "accession": "GCA_002735305.1",
                "taxid": 1712665,
                "species_taxid": 1712665,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.622,
                "matched_fragments": 711,
                "total_fragments": 781,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Roseburia faecis",
                "strain": "strain=M72",
                "accession": "GCA_001406815.1",
                "taxid": 301302,
                "species_taxid": 301302,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.247,
                "matched_fragments": 94,
                "total_fragments": 781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1 82",
                "accession": "GCA_025151715.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9104,
                "matched_fragments": 65,
                "total_fragments": 781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_900537995.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8124,
                "matched_fragments": 67,
                "total_fragments": 781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia intestinalis",
                "strain": "strain=L1-82",
                "accession": "GCA_000156535.1",
                "taxid": 166486,
                "species_taxid": 166486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7806,
                "matched_fragments": 68,
                "total_fragments": 781,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseburia porci",
                "strain": "strain=MUC/MUC-530-WT-4D",
                "accession": "GCA_009695765.1",
                "taxid": 2605790,
                "species_taxid": 2605790,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7064,
                "matched_fragments": 84,
                "total_fragments": 781,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 70.71,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002735305.1",
                "gtdb_species": "s__Agathobacter ruminis",
                "ani": 97.6,
                "matched_fragments": 712,
                "total_fragments": 781,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.23",
                "min_intra_species_ani": "97.94",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_015057085.1",
                "gtdb_species": "s__Agathobacter sp015057085",
                "ani": 81.2315,
                "matched_fragments": 361,
                "total_fragments": 781,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003479605.1",
                "gtdb_species": "s__RUG115 sp900066395",
                "ani": 77.341,
                "matched_fragments": 58,
                "total_fragments": 781,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__RUG115",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "97.78",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCA_900317585.1",
                "gtdb_species": "s__Agathobacter sp900317585",
                "ani": 77.2621,
                "matched_fragments": 65,
                "total_fragments": 781,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "95.52",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001406815.1",
                "gtdb_species": "s__Agathobacter faecis",
                "ani": 77.2493,
                "matched_fragments": 93,
                "total_fragments": 781,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.10",
                "min_intra_species_ani": "97.07",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.62",
                "num_clustered_genomes": 43,
                "status": "-"
            },
            {
                "accession": "GCA_900316805.1",
                "gtdb_species": "s__Agathobacter sp900316805",
                "ani": 77.0577,
                "matched_fragments": 54,
                "total_fragments": 781,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.85",
                "min_intra_species_ani": "99.74",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900552085.1",
                "gtdb_species": "s__Agathobacter sp900552085",
                "ani": 76.9173,
                "matched_fragments": 66,
                "total_fragments": 781,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.03",
                "min_intra_species_ani": "95.54",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_017409825.1",
                "gtdb_species": "s__Agathobacter sp017409825",
                "ani": 76.8454,
                "matched_fragments": 51,
                "total_fragments": 781,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.24",
                "min_intra_species_ani": "96.24",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900550545.1",
                "gtdb_species": "s__Agathobacter sp900550545",
                "ani": 76.5626,
                "matched_fragments": 83,
                "total_fragments": 781,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900753715.1",
                "gtdb_species": "s__Roseburia sp900753715",
                "ani": 76.3559,
                "matched_fragments": 60,
                "total_fragments": 781,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Roseburia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.04",
                "min_intra_species_ani": "99.04",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900549895.1",
                "gtdb_species": "s__Agathobacter sp900549895",
                "ani": 76.3003,
                "matched_fragments": 64,
                "total_fragments": 781,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910587655.1",
                "gtdb_species": "s__Agathobacter sp910587655",
                "ani": 76.1326,
                "matched_fragments": 63,
                "total_fragments": 781,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Agathobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Agathobacter",
        "s__Agathobacter ruminis"
    ],
    "_genome_taxon": [
        "Agathobacter",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Agathobacter",
        "s__Agathobacter ruminis",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Agathobacter",
        "Agathobacter",
        "ruminis"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}