{
    "type": "genome",
    "identifier": "GCA_024692385.1",
    "organism": "Prevotella sp.",
    "title": "Prevotella sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Baqiyatallah University of Medical Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024692385.1",
        "bioproject": "PRJNA746430",
        "biosample": "SAMN20246994",
        "wgs_master": "JAILMS000000000.1",
        "refseq_category": "na",
        "taxid": "59823",
        "species_taxid": "59823",
        "organism_name": "Prevotella sp.",
        "infraspecific_name": "",
        "isolate": "RUI260",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/15",
        "asm_name": "ASM2469238v1",
        "submitter": "Baqiyatallah University of Medical Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/692/385/GCA_024692385.1_ASM2469238v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-15",
    "dateModified": "2022-08-15",
    "datePublished": "2022-08-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Prevotella sp."
        ],
        "sample_taxid": [
            "59823"
        ],
        "sample_host_organism": [
            "camel"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iran: Karaj"
        ],
        "sample_host_location_id": [],
        "data_size": "0.646 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 80.66,
        "contamination": 10.65,
        "strain_heterogeneity": 75.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2232023",
        "Number of Sequences": "178",
        "Longest Sequences (bp)": "51370",
        "N50 (bp)": "17862",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.6",
        "Number of CDSs": "1651",
        "Average Protein Length": "375.0",
        "Coding Ratio (%)": "83.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Prevotella ruminicola",
                "strain": "strain=ATCC 19189",
                "accession": "GCA_900108375.1",
                "taxid": 839,
                "species_taxid": 839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.805,
                "matched_fragments": 180,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella ruminicola",
                "strain": "strain=Bryant 23",
                "accession": "GCA_000025925.1",
                "taxid": 839,
                "species_taxid": 839,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7341,
                "matched_fragments": 186,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella brevis",
                "strain": "strain=ATCC 19188",
                "accession": "GCA_000621725.1",
                "taxid": 83231,
                "species_taxid": 83231,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6134,
                "matched_fragments": 162,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella copri",
                "strain": "strain=DSM 18205",
                "accession": "GCA_009495405.1",
                "taxid": 165179,
                "species_taxid": 165179,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.2306,
                "matched_fragments": 81,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella copri",
                "strain": "strain=DSM 18205",
                "accession": "GCA_000157935.1",
                "taxid": 165179,
                "species_taxid": 165179,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.1817,
                "matched_fragments": 83,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xylanibacter rodentium",
                "strain": "strain=PROD",
                "accession": "GCA_013166575.1",
                "taxid": 2736289,
                "species_taxid": 2736289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4839,
                "matched_fragments": 66,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hallella faecis",
                "strain": "strain=CLA-AA-H145",
                "accession": "GCA_018789675.1",
                "taxid": 2841596,
                "species_taxid": 2841596,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1279,
                "matched_fragments": 68,
                "total_fragments": 647,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 80.66,
            "contamination": 10.65,
            "strain_heterogeneity": 75.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900314985.1",
                "gtdb_species": "s__Prevotella sp900314985",
                "ani": 84.593,
                "matched_fragments": 503,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.71",
                "min_intra_species_ani": "97.24",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_902799355.1",
                "gtdb_species": "s__Prevotella sp902799355",
                "ani": 84.0284,
                "matched_fragments": 433,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.80",
                "min_intra_species_ani": "96.48",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900313235.1",
                "gtdb_species": "s__Prevotella sp900313235",
                "ani": 82.6522,
                "matched_fragments": 413,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900316265.1",
                "gtdb_species": "s__Prevotella sp900316265",
                "ani": 81.9999,
                "matched_fragments": 408,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.64",
                "min_intra_species_ani": "96.94",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.66",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_902800925.1",
                "gtdb_species": "s__Prevotella sp902800925",
                "ani": 81.9695,
                "matched_fragments": 386,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902798425.1",
                "gtdb_species": "s__Prevotella sp902798425",
                "ani": 81.5974,
                "matched_fragments": 414,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.06",
                "min_intra_species_ani": "97.06",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_902772585.1",
                "gtdb_species": "s__Prevotella sp902772585",
                "ani": 81.1736,
                "matched_fragments": 414,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900119285.1",
                "gtdb_species": "s__Prevotella sp900119285",
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                "matched_fragments": 367,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "98.20",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900199555.1",
                "gtdb_species": "s__Prevotella sp900199555",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "97.82",
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                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_900318555.1",
                "gtdb_species": "s__Prevotella sp900318555",
                "ani": 78.9666,
                "matched_fragments": 233,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 8,
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            },
            {
                "accession": "GCA_902776195.1",
                "gtdb_species": "s__Prevotella sp902776195",
                "ani": 78.2009,
                "matched_fragments": 178,
                "total_fragments": 647,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
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                "mean_intra_species_ani": "97.27",
                "min_intra_species_ani": "97.27",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.226,
        "cell_length": 0.114,
        "doubling_h": null,
        "growth_tmp": 36.755,
        "optimum_tmp": 35.219,
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        "coding_genes": 2508.172,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 50.875,
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        "sporulation": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.975,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "g__Prevotella",
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    ],
    "_genome_taxon": [
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        "p__Bacteroidota",
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        "o__Bacteroidales",
        "f__Bacteroidaceae",
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        "s__Prevotella sp024692385",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Prevotella",
        "Prevotella",
        "sp024692385"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}