{
    "type": "genome",
    "identifier": "GCA_024693025.1",
    "organism": "Succinivibrio sp.",
    "title": "Succinivibrio sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Baqiyatallah University of Medical Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024693025.1",
        "bioproject": "PRJNA746430",
        "biosample": "SAMN20246968",
        "wgs_master": "JAILLS000000000.1",
        "refseq_category": "na",
        "taxid": "2053619",
        "species_taxid": "2053619",
        "organism_name": "Succinivibrio sp.",
        "infraspecific_name": "",
        "isolate": "RUI234",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/15",
        "asm_name": "ASM2469302v1",
        "submitter": "Baqiyatallah University of Medical Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/693/025/GCA_024693025.1_ASM2469302v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-15",
    "dateModified": "2022-08-15",
    "datePublished": "2022-08-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Succinivibrio sp."
        ],
        "sample_taxid": [
            "2053619"
        ],
        "sample_host_organism": [
            "camel"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iran: Karaj"
        ],
        "sample_host_location_id": [],
        "data_size": "0.612 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2132471",
        "Number of Sequences": "129",
        "Longest Sequences (bp)": "111964",
        "N50 (bp)": "28810",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "49.8",
        "Number of CDSs": "1748",
        "Average Protein Length": "342.6",
        "Coding Ratio (%)": "84.2",
        "Number of rRNAs": "2",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Anaerobiospirillum thomasii",
                "strain": "strain=NCTC12467",
                "accession": "GCA_900445255.1",
                "taxid": 179995,
                "species_taxid": 179995,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1645,
                "matched_fragments": 64,
                "total_fragments": 648,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 2.08,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_017635415.1",
                "gtdb_species": "s__Succinivibrio sp017635415",
                "ani": 77.3913,
                "matched_fragments": 74,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004557545.1",
                "gtdb_species": "s__Succinivibrio hippei_A",
                "ani": 76.5623,
                "matched_fragments": 50,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017694225.1",
                "gtdb_species": "s__Avisuccinivibrio stercorigallinarum",
                "ani": 76.4723,
                "matched_fragments": 90,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Avisuccinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003477345.1",
                "gtdb_species": "s__Succinivibrio sp003477345",
                "ani": 76.396,
                "matched_fragments": 51,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "97.94",
                "mean_intra_species_af": "0.72",
                "min_intra_species_af": "0.72",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002473165.1",
                "gtdb_species": "s__Succinivibrio sp002473165",
                "ani": 76.2286,
                "matched_fragments": 76,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "99.32",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_900445255.1",
                "gtdb_species": "s__Anaerobiospirillum_A thomasii",
                "ani": 76.1645,
                "matched_fragments": 64,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Anaerobiospirillum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.91",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017469335.1",
                "gtdb_species": "s__Succinivibrio sp017469335",
                "ani": 76.161,
                "matched_fragments": 79,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900116345.1",
                "gtdb_species": "s__Succinivibrio dextrinosolvens_B",
                "ani": 75.9813,
                "matched_fragments": 58,
                "total_fragments": 648,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Succinivibrionaceae;g__Succinivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.523,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 38.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2857734.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Succinivibrionaceae",
        "g__Succinivibrio",
        "s__Succinivibrio sp024693025"
    ],
    "_genome_taxon": [
        "Succinivibrio",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Enterobacterales",
        "f__Succinivibrionaceae",
        "g__Succinivibrio",
        "s__Succinivibrio sp024693025",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Enterobacterales",
        "Succinivibrionaceae",
        "Succinivibrio",
        "Succinivibrio",
        "sp024693025"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}