{ "type": "genome", "identifier": "GCA_024693045.1", "organism": "Treponema sp.", "title": "Treponema sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Baqiyatallah University of Medical Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024693045.1", "bioproject": "PRJNA746430", "biosample": "SAMN20246966", "wgs_master": "JAILLQ000000000.1", "refseq_category": "na", "taxid": "166", "species_taxid": "166", "organism_name": "Treponema sp.", "infraspecific_name": "", "isolate": "RUI232", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/15", "asm_name": "ASM2469304v1", "submitter": "Baqiyatallah University of Medical Sciences", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/693/045/GCA_024693045.1_ASM2469304v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-15", "dateModified": "2022-08-15", "datePublished": "2022-08-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Treponema sp." ], "sample_taxid": [ "166" ], "sample_host_organism": [ "camel" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Karaj" ], "sample_host_location_id": [], "data_size": "0.711 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2527064", "Number of Sequences": "58", "Longest Sequences (bp)": "227386", "N50 (bp)": "89672", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.7", "Number of CDSs": "2142", "Average Protein Length": "355.5", "Coding Ratio (%)": "90.4", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Treponema porcinum", "strain": "strain=ATCC BAA-908", "accession": "GCA_900167145.1", "taxid": 261392, "species_taxid": 261392, "relation_to_type": "type", "validated": true, "ani": 77.6642, "matched_fragments": 102, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Treponema rectale", "strain": "strain=DSM 103679", "accession": "GCA_014202035.1", "taxid": 744512, "species_taxid": 744512, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8936, "matched_fragments": 98, "total_fragments": 810, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Treponema berlinense", "strain": "strain=ATCC BAA-909", "accession": "GCA_900167025.1", "taxid": 225004, 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