{ "type": "genome", "identifier": "GCA_024696015.1", "organism": "Desulfovibrio sp.", "title": "Desulfovibrio sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Baqiyatallah University of Medical Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024696015.1", "bioproject": "PRJNA746430", "biosample": "SAMN20246850", "wgs_master": "JAILHE000000000.1", "refseq_category": "na", "taxid": "885", "species_taxid": "885", "organism_name": "Desulfovibrio sp.", "infraspecific_name": "", "isolate": "RUI116", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/15", "asm_name": "ASM2469601v1", "submitter": "Baqiyatallah University of Medical Sciences", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/696/015/GCA_024696015.1_ASM2469601v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-15", "dateModified": "2022-08-15", "datePublished": "2022-08-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfovibrio sp." ], "sample_taxid": [ "885" ], "sample_host_organism": [ "camel" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Karaj" ], "sample_host_location_id": [], "data_size": "1.143 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 60.42, "contamination": 2.08, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4050964", "Number of Sequences": "748", "Longest Sequences (bp)": "40824", "N50 (bp)": "6687", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.0", "Number of CDSs": "2944", "Average Protein Length": "289.7", "Coding Ratio (%)": "63.2", "Number of rRNAs": "0", "Number of tRNAs": "58", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfovibrio piger", "strain": "strain=ATCC 29098", "accession": "GCA_000156375.1", "taxid": 901, "species_taxid": 901, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4416, "matched_fragments": 170, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfovibrio porci", "strain": "strain=PG-178-WT-4", "accession": "GCA_009696265.1", "taxid": 2605782, "species_taxid": 2605782, "relation_to_type": "type", "validated": true, "ani": 76.7809, "matched_fragments": 136, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfohalovibrio reitneri", "strain": "strain=L21-Syr-AB", "accession": "GCA_000711295.1", "taxid": 1307759, "species_taxid": 1307759, "relation_to_type": "type", "validated": true, "ani": 76.5145, "matched_fragments": 60, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfomicrobium escambiense", "strain": "strain=DSM 10707", "accession": "GCA_000428825.1", "taxid": 29503, "species_taxid": 29503, "relation_to_type": "type", "validated": true, "ani": 76.3638, "matched_fragments": 89, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=DSM 101483", "accession": "GCA_004365595.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 76.2828, "matched_fragments": 83, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudodesulfovibrio indicus", "strain": "strain=J2", "accession": "GCA_001563225.1", "taxid": 1716143, "species_taxid": 1716143, "relation_to_type": "type", "validated": true, "ani": 76.2828, "matched_fragments": 83, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paucidesulfovibrio longus", "strain": "strain=DSM 6739", "accession": "GCA_000420485.1", "taxid": 889, "species_taxid": 889, "relation_to_type": "type", "validated": true, "ani": 76.1184, "matched_fragments": 65, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupidesulfovibrio liaohensis", "strain": "strain=XJ01", "accession": "GCA_011682075.1", "taxid": 2604158, "species_taxid": 2604158, "relation_to_type": "type", "validated": true, "ani": 76.0667, "matched_fragments": 93, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobaculum xiamenense", "strain": "strain=DSM 24233", "accession": "GCA_011927665.1", "taxid": 995050, "species_taxid": 995050, "relation_to_type": "type", "validated": true, "ani": 75.8894, "matched_fragments": 71, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fundidesulfovibrio magnetotacticus", "strain": "strain=FSS-1", "accession": "GCA_013019105.1", "taxid": 2730080, "species_taxid": 2730080, "relation_to_type": "type", "validated": true, "ani": 75.8875, "matched_fragments": 95, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bilophila wadsworthia", "strain": "strain=ATCC 49260", "accession": "GCA_000701705.1", "taxid": 35833, "species_taxid": 35833, "relation_to_type": "type", "validated": true, "ani": 75.7022, "matched_fragments": 73, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio magneticus", "strain": "strain=RS-1", "accession": "GCA_000010665.1", "taxid": 184917, "species_taxid": 184917, "relation_to_type": "type", "validated": true, "ani": 75.5473, "matched_fragments": 84, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solidesulfovibrio alcoholivorans", "strain": "strain=DSM 5433", "accession": "GCA_000702665.1", "taxid": 81406, "species_taxid": 81406, "relation_to_type": "type", "validated": true, "ani": 75.5267, "matched_fragments": 103, "total_fragments": 939, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 60.42, "contamination": 2.08, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_002369295.1", "gtdb_species": "s__Desulfovibrio sp002369295", "ani": 97.7459, "matched_fragments": 542, "total_fragments": 939, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.45", "min_intra_species_ani": "99.45", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "conclusive" }, { 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"accession": "GCA_900319575.1", "gtdb_species": "s__Desulfovibrio sp900319575", "ani": 77.9032, "matched_fragments": 160, "total_fragments": 939, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.78", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCA_019113165.1", "gtdb_species": "s__Desulfovibrio intestinipullorum", "ani": 77.6521, "matched_fragments": 183, "total_fragments": 939, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Desulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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