{
    "type": "genome",
    "identifier": "GCA_024697025.1",
    "organism": "Pseudobutyrivibrio sp.",
    "title": "Pseudobutyrivibrio sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Baqiyatallah University of Medical Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024697025.1",
        "bioproject": "PRJNA746430",
        "biosample": "SAMN20246827",
        "wgs_master": "JAILGH000000000.1",
        "refseq_category": "na",
        "taxid": "2014367",
        "species_taxid": "2014367",
        "organism_name": "Pseudobutyrivibrio sp.",
        "infraspecific_name": "",
        "isolate": "RUI093",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/15",
        "asm_name": "ASM2469702v1",
        "submitter": "Baqiyatallah University of Medical Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/697/025/GCA_024697025.1_ASM2469702v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-15",
    "dateModified": "2022-08-15",
    "datePublished": "2022-08-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudobutyrivibrio sp."
        ],
        "sample_taxid": [
            "2014367"
        ],
        "sample_host_organism": [
            "camel"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iran: Karaj"
        ],
        "sample_host_location_id": [],
        "data_size": "0.776 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.76,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2713637",
        "Number of Sequences": "110",
        "Longest Sequences (bp)": "150794",
        "N50 (bp)": "49451",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.2",
        "Number of CDSs": "2361",
        "Average Protein Length": "333.8",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pseudobutyrivibrio xylanivorans",
                "strain": "strain=DSM 14809",
                "accession": "GCA_900141825.1",
                "taxid": 185007,
                "species_taxid": 185007,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6934,
                "matched_fragments": 334,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudobutyrivibrio ruminis",
                "strain": "strain=DSM 9787",
                "accession": "GCA_900218035.1",
                "taxid": 46206,
                "species_taxid": 46206,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.9176,
                "matched_fragments": 336,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Butyrivibrio fibrisolvens",
                "strain": "strain=DSM 3071",
                "accession": "GCA_900129945.1",
                "taxid": 831,
                "species_taxid": 831,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 76.6443,
                "matched_fragments": 57,
                "total_fragments": 847,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 75.76,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002309345.1",
                "gtdb_species": "s__Pseudobutyrivibrio sp002309345",
                "ani": 82.3619,
                "matched_fragments": 454,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_010906925.1",
                "gtdb_species": "s__Pseudobutyrivibrio sp900112855",
                "ani": 81.0018,
                "matched_fragments": 374,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.62",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_900141825.1",
                "gtdb_species": "s__Pseudobutyrivibrio xylanivorans",
                "ani": 80.6458,
                "matched_fragments": 337,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000424005.1",
                "gtdb_species": "s__Pseudobutyrivibrio ruminis_C",
                "ani": 80.6087,
                "matched_fragments": 346,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "97.96",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_015057185.1",
                "gtdb_species": "s__Pseudobutyrivibrio sp015057185",
                "ani": 80.5727,
                "matched_fragments": 311,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900100545.1",
                "gtdb_species": "s__Pseudobutyrivibrio sp900100545",
                "ani": 80.5671,
                "matched_fragments": 330,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.38",
                "min_intra_species_ani": "98.38",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017557435.1",
                "gtdb_species": "s__Pseudobutyrivibrio sp017557435",
                "ani": 80.5268,
                "matched_fragments": 385,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.94",
                "min_intra_species_ani": "95.13",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_008935055.1",
                "gtdb_species": "s__Pseudobutyrivibrio xylanivorans_A",
                "ani": 80.3425,
                "matched_fragments": 336,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000209815.1",
                "gtdb_species": "s__Pseudobutyrivibrio fibrisolvens_A",
                "ani": 80.2964,
                "matched_fragments": 343,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900104335.1",
                "gtdb_species": "s__Pseudobutyrivibrio sp900104335",
                "ani": 80.2296,
                "matched_fragments": 358,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900113655.1",
                "gtdb_species": "s__Pseudobutyrivibrio sp900113655",
                "ani": 80.1669,
                "matched_fragments": 310,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015057245.1",
                "gtdb_species": "s__Pseudobutyrivibrio ruminis_E",
                "ani": 80.1138,
                "matched_fragments": 341,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000703005.1",
                "gtdb_species": "s__Pseudobutyrivibrio ruminis_A",
                "ani": 79.932,
                "matched_fragments": 335,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900218035.1",
                "gtdb_species": "s__Pseudobutyrivibrio ruminis",
                "ani": 79.9203,
                "matched_fragments": 335,
                "total_fragments": 847,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pseudobutyrivibrio",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.30",
                "min_intra_species_ani": "96.03",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.461,
        "cell_length": 0.088,
        "doubling_h": null,
        "growth_tmp": 37.5,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 3175248.6,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 1.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Pseudobutyrivibrio",
        "s__Pseudobutyrivibrio sp024697025"
    ],
    "_genome_taxon": [
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        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Pseudobutyrivibrio",
        "s__Pseudobutyrivibrio sp024697025",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Pseudobutyrivibrio",
        "Pseudobutyrivibrio",
        "sp024697025"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}