{
    "type": "genome",
    "identifier": "GCA_024697875.1",
    "organism": "Saccharofermentans sp.",
    "title": "Saccharofermentans sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Baqiyatallah University of Medical Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024697875.1",
        "bioproject": "PRJNA746430",
        "biosample": "SAMN20246746",
        "wgs_master": "JAILDE000000000.1",
        "refseq_category": "na",
        "taxid": "2775029",
        "species_taxid": "2775029",
        "organism_name": "Saccharofermentans sp.",
        "infraspecific_name": "",
        "isolate": "RUI012",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/15",
        "asm_name": "ASM2469787v1",
        "submitter": "Baqiyatallah University of Medical Sciences",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/697/875/GCA_024697875.1_ASM2469787v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-15",
    "dateModified": "2022-08-15",
    "datePublished": "2022-08-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Saccharofermentans sp."
        ],
        "sample_taxid": [
            "2775029"
        ],
        "sample_host_organism": [
            "camel"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Iran: Karaj"
        ],
        "sample_host_location_id": [],
        "data_size": "0.665 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 51.39,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2306941",
        "Number of Sequences": "134",
        "Longest Sequences (bp)": "79349",
        "N50 (bp)": "29882",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "48.0",
        "Number of CDSs": "1980",
        "Average Protein Length": "341.1",
        "Coding Ratio (%)": "87.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 51.39,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_017940895.1",
                "gtdb_species": "s__Saccharofermentans sp017940895",
                "ani": 95.8404,
                "matched_fragments": 592,
                "total_fragments": 701,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.27",
                "min_intra_species_ani": "96.25",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_017552455.1",
                "gtdb_species": "s__Saccharofermentans sp017552455",
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                "matched_fragments": 397,
                "total_fragments": 701,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.48",
                "min_intra_species_ani": "97.48",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017451265.1",
                "gtdb_species": "s__Saccharofermentans sp017451265",
                "ani": 84.1901,
                "matched_fragments": 375,
                "total_fragments": 701,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902791885.1",
                "gtdb_species": "s__Saccharofermentans sp902791885",
                "ani": 82.3872,
                "matched_fragments": 332,
                "total_fragments": 701,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900314745.1",
                "gtdb_species": "s__Saccharofermentans sp900314745",
                "ani": 82.2761,
                "matched_fragments": 347,
                "total_fragments": 701,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "96.37",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_017958365.1",
                "gtdb_species": "s__Saccharofermentans sp017958365",
                "ani": 79.9904,
                "matched_fragments": 221,
                "total_fragments": 701,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017527865.1",
                "gtdb_species": "s__Saccharofermentans sp017527865",
                "ani": 79.8698,
                "matched_fragments": 240,
                "total_fragments": 701,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.25",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002450095.1",
                "gtdb_species": "s__Saccharofermentans sp002450095",
                "ani": 79.6781,
                "matched_fragments": 271,
                "total_fragments": 701,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.23",
                "min_intra_species_ani": "97.23",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017480325.1",
                "gtdb_species": "s__Saccharofermentans sp017480325",
                "ani": 78.8455,
                "matched_fragments": 194,
                "total_fragments": 701,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017550385.1",
                "gtdb_species": "s__Saccharofermentans sp017550385",
                "ani": 77.3537,
                "matched_fragments": 79,
                "total_fragments": 701,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Saccharofermentanales;f__Saccharofermentanaceae;g__Saccharofermentans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.079,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.5,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Saccharofermentanales",
        "f__Saccharofermentanaceae",
        "g__Saccharofermentans",
        "s__Saccharofermentans sp017940895"
    ],
    "_genome_taxon": [
        "Saccharofermentans",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Saccharofermentanales",
        "f__Saccharofermentanaceae",
        "g__Saccharofermentans",
        "s__Saccharofermentans sp017940895",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Saccharofermentanales",
        "Saccharofermentanaceae",
        "Saccharofermentans",
        "Saccharofermentans",
        "sp017940895"
    ],
    "_meo": [
        {
            "id": "MEO_0000046",
            "label": "rumen"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}