{ "type": "genome", "identifier": "GCA_024698165.1", "organism": "Clostridia bacterium", "title": "Clostridia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Baqiyatallah University of Medical Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024698165.1", "bioproject": "PRJNA746430", "biosample": "SAMN20247118", "wgs_master": "JAILRM000000000.1", "refseq_category": "na", "taxid": "2044939", "species_taxid": "2044939", "organism_name": "Clostridia bacterium", "infraspecific_name": "", "isolate": "RUI384", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/15", "asm_name": "ASM2469816v1", "submitter": "Baqiyatallah University of Medical Sciences", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/698/165/GCA_024698165.1_ASM2469816v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-15", "dateModified": "2022-08-15", "datePublished": "2022-08-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Clostridia bacterium" ], "sample_taxid": [ "2044939" ], "sample_host_organism": [ "camel" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Karaj" ], "sample_host_location_id": [], "data_size": "0.720 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 12.5, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2513672", "Number of Sequences": "78", "Longest Sequences (bp)": "146840", "N50 (bp)": "53738", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.4", "Number of CDSs": "1968", "Average Protein Length": "372.2", "Coding Ratio (%)": "87.4", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 12.5, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCA_017959965.1", "gtdb_species": "s__UBA1212 sp017959965", "ani": 97.4945, "matched_fragments": 589, "total_fragments": 798, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1212;g__UBA1212", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002308595.1", "gtdb_species": "s__UBA1212 sp002308595", "ani": 79.4282, "matched_fragments": 239, "total_fragments": 798, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1212;g__UBA1212", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.60", "min_intra_species_ani": "96.60", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017444825.1", "gtdb_species": "s__UBA1212 sp017444825", "ani": 78.9644, "matched_fragments": 296, "total_fragments": 798, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1212;g__UBA1212", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902782645.1", "gtdb_species": "s__UBA1212 sp902782645", "ani": 78.5186, "matched_fragments": 256, "total_fragments": 798, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1212;g__UBA1212", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902792515.1", "gtdb_species": "s__UBA1212 sp902792515", "ani": 77.289, "matched_fragments": 150, "total_fragments": 798, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1212;g__UBA1212", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "96.30", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017848335.1", "gtdb_species": "s__UBA1212 sp017848335", "ani": 77.1562, "matched_fragments": 98, "total_fragments": 798, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1212;g__UBA1212", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002309655.1", "gtdb_species": "s__UBA1212 sp002309655", "ani": 77.046, "matched_fragments": 148, "total_fragments": 798, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__UBA1212;f__UBA1212;g__UBA1212", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "97.40", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 8, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__UBA1212", "f__UBA1212", "g__UBA1212", "s__UBA1212 sp017959965" ], "_genome_taxon": [ "Clostridia", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__UBA1212", "f__UBA1212", "g__UBA1212", "s__UBA1212 sp017959965", "Bacteria", "Bacillota", "A", "Clostridia", "UBA1212", "UBA1212", "UBA1212", "UBA1212", "sp017959965" ], "_meo": [ { "id": "MEO_0000046", "label": "rumen" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }