{ "tc_result": [ { "organism_name": "Treponema ruminis", "strain": "strain=DSM 103462", "accession": "GCA_014201975.1", "taxid": 744515, "species_taxid": 744515, "relation_to_type": "type", "validated": true, "ani": 77.2678, "matched_fragments": 120, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Treponema berlinense", "strain": "strain=ATCC BAA-909", "accession": "GCA_900167025.1", "taxid": 225004, "species_taxid": 225004, "relation_to_type": "type", "validated": true, "ani": 76.8341, "matched_fragments": 70, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Treponema saccharophilum", "strain": "strain=DSM 2985", "accession": "GCA_000255555.2", "taxid": 165, "species_taxid": 165, "relation_to_type": "type", "validated": true, "ani": 76.72, "matched_fragments": 78, "total_fragments": 880, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017449285.1", "gtdb_species": "s__Treponema_D sp017449285", "ani": 77.8936, "matched_fragments": 153, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017161305.1", "gtdb_species": "s__Treponema_D ruminis", "ani": 77.2858, "matched_fragments": 106, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017450535.1", "gtdb_species": "s__Treponema_D sp017450535", "ani": 77.2738, "matched_fragments": 122, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017430385.1", "gtdb_species": "s__Treponema_D sp017430385", "ani": 77.1007, "matched_fragments": 100, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017484285.1", "gtdb_species": "s__Treponema_D sp017484285", "ani": 77.0552, "matched_fragments": 127, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002369025.1", "gtdb_species": "s__Treponema_D sp002369025", "ani": 77.0284, "matched_fragments": 132, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.41", "min_intra_species_ani": "97.17", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.77", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900167025.1", "gtdb_species": "s__Treponema_D berlinense", "ani": 76.8687, "matched_fragments": 68, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "98.81", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000619925.1", "gtdb_species": "s__Treponema_D sp000619925", "ani": 76.5562, "matched_fragments": 62, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014804085.1", "gtdb_species": "s__Treponema_D sp014804085", "ani": 76.4649, "matched_fragments": 100, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.34", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.78", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900770075.1", "gtdb_species": "s__Treponema_D sp900770075", "ani": 76.3888, "matched_fragments": 62, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.11", "min_intra_species_ani": "97.11", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002394465.1", "gtdb_species": "s__Treponema_D sp002394465", "ani": 76.2806, "matched_fragments": 60, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902803735.1", "gtdb_species": "s__Treponema_D sp902803735", "ani": 76.2525, "matched_fragments": 50, "total_fragments": 880, "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Treponematales;f__Treponemataceae;g__Treponema_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }