{ "type": "genome", "identifier": "GCA_024698685.1", "organism": "bacterium", "title": "bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Baqiyatallah University of Medical Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024698685.1", "bioproject": "PRJNA746430", "biosample": "SAMN20247105", "wgs_master": "JAILQZ000000000.1", "refseq_category": "na", "taxid": "1869227", "species_taxid": "1869227", "organism_name": "bacterium", "infraspecific_name": "", "isolate": "RUI371", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/15", "asm_name": "ASM2469868v1", "submitter": "Baqiyatallah University of Medical Sciences", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/698/685/GCA_024698685.1_ASM2469868v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-15", "dateModified": "2022-08-15", "datePublished": "2022-08-15", "_annotation": { "sample_count": 1, "sample_organism": [ "bacterium" ], "sample_taxid": [ "1869227" ], "sample_host_organism": [ "camel" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Karaj" ], "sample_host_location_id": [], "data_size": "0.503 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1782089", "Number of Sequences": "99", "Longest Sequences (bp)": "114774", "N50 (bp)": "27735", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "1448", "Average Protein Length": "339.3", "Coding Ratio (%)": "82.7", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gordonibacter pamelaeae", "strain": "strain=7-10-1-bT", "accession": "GCA_000210055.1", "taxid": 471189, "species_taxid": 471189, "relation_to_type": "type", "validated": true, "ani": 77.1056, "matched_fragments": 65, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter urolithinfaciens", "strain": "strain=DSM 27213T", "accession": "GCA_900199375.1", "taxid": 1335613, "species_taxid": 1335613, "relation_to_type": "type", "validated": true, "ani": 76.8332, "matched_fragments": 66, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gordonibacter urolithinfaciens", "strain": "strain=DSM 27213", "accession": "GCA_003788975.1", "taxid": 1335613, "species_taxid": 1335613, "relation_to_type": "type", "validated": true, "ani": 76.801, "matched_fragments": 67, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella sinensis", "strain": "strain=DSM 16107", "accession": "GCA_003725965.1", "taxid": 242230, "species_taxid": 242230, "relation_to_type": "type", "validated": true, "ani": 76.5348, "matched_fragments": 58, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter mediterraneus", "strain": "strain=Marseille-P3256", "accession": "GCA_900119385.1", "taxid": 1871031, "species_taxid": 1871031, "relation_to_type": "type", "validated": true, "ani": 76.5271, "matched_fragments": 56, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olsenella intestinalis", "strain": "strain=KCTC 25379", "accession": "GCA_023276655.1", "taxid": 2930083, "species_taxid": 2930083, "relation_to_type": "type", "validated": true, "ani": 76.5262, "matched_fragments": 58, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella sinensis", "strain": "strain=DSM 16107", "accession": "GCA_003339815.1", "taxid": 242230, "species_taxid": 242230, "relation_to_type": "type", "validated": true, "ani": 76.5033, "matched_fragments": 59, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eggerthella timonensis", "strain": "strain=Marseille-P3135", "accession": "GCA_900184265.1", "taxid": 1871008, "species_taxid": 1871008, "relation_to_type": "type", "validated": true, "ani": 76.1961, "matched_fragments": 73, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Senegalimassilia anaerobia", "strain": "strain=type strain: JC110", "accession": "GCA_000236865.1", "taxid": 1473216, "species_taxid": 1473216, "relation_to_type": "type", "validated": true, "ani": 75.9263, "matched_fragments": 56, "total_fragments": 540, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017515355.1", "gtdb_species": "s__RGIG5709 sp017515355", "ani": 91.9508, "matched_fragments": 244, "total_fragments": 540, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__CADBOM01;g__RGIG5709", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016899935.1", "gtdb_species": "s__Thermophilibacter uli_B", "ani": 76.5827, "matched_fragments": 56, "total_fragments": 540, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Thermophilibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003339815.1", "gtdb_species": "s__Eggerthella sinensis", "ani": 76.5033, "matched_fragments": 59, "total_fragments": 540, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "98.15", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014982725.1", "gtdb_species": "s__Thermophilibacter sp014982725", "ani": 76.358, "matched_fragments": 57, "total_fragments": 540, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Thermophilibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015062715.1", "gtdb_species": "s__SIG37 sp015062715", "ani": 76.2921, "matched_fragments": 62, "total_fragments": 540, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__SIG37", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.94", "min_intra_species_ani": "96.94", "mean_intra_species_af": "0.73", "min_intra_species_af": "0.73", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900184265.1", "gtdb_species": "s__Eggerthella timonensis", "ani": 76.196, "matched_fragments": 73, "total_fragments": 540, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Coriobacteriia;o__Coriobacteriales;f__Eggerthellaceae;g__Eggerthella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__CADBOM01", "g__RGIG5709", "s__RGIG5709 sp024698685" ], "_genome_taxon": [ "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Coriobacteriia", "o__Coriobacteriales", "f__CADBOM01", "g__RGIG5709", "s__RGIG5709 sp024698685", "Bacteria", "Actinomycetota", "Coriobacteriia", "Coriobacteriales", "CADBOM01", "RGIG5709", "RGIG5709", "sp024698685" ], "_meo": [ { "id": "MEO_0000046", "label": "rumen" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }