{ "tc_result": [ { "organism_name": "Thiobacillus denitrificans", "strain": "strain=DSM 12475", "accession": "GCA_000376425.1", "taxid": 36861, "species_taxid": 36861, "relation_to_type": "type", "validated": true, "ani": 91.9631, "matched_fragments": 725, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiobacillus thioparus", "strain": "strain=DSM 505", "accession": "GCA_000373385.1", "taxid": 931, "species_taxid": 931, "relation_to_type": "type", "validated": true, "ani": 84.0492, "matched_fragments": 607, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=DSM 103923", "accession": "GCA_004346085.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 78.8163, "matched_fragments": 272, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=J1A", "accession": "GCA_003967275.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 78.7087, "matched_fragments": 283, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=BSN1", "accession": "GCA_003865015.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 78.5299, "matched_fragments": 238, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurisoma sediminicola", "strain": "strain=DSM 26916", "accession": "GCA_003663955.1", "taxid": 1381557, "species_taxid": 1381557, "relation_to_type": "type", "validated": true, "ani": 78.5208, "matched_fragments": 239, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera aminoaromatica", "strain": "strain=S2", "accession": "GCA_000310185.1", "taxid": 164330, "species_taxid": 164330, "relation_to_type": "type", "validated": true, "ani": 78.1731, "matched_fragments": 213, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimicrobium lacus", "strain": "strain=skT11", "accession": "GCA_011764585.1", "taxid": 2715678, "species_taxid": 2715678, "relation_to_type": "type", "validated": true, "ani": 78.053, "matched_fragments": 235, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus rhizosphaerae", "strain": "strain=CC-YHH848", "accession": "GCA_004801305.1", "taxid": 2565932, "species_taxid": 2565932, "relation_to_type": "type", "validated": true, "ani": 77.8681, "matched_fragments": 255, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus purpureus", "strain": "strain=DSM 168", "accession": "GCA_016653115.1", "taxid": 1067, "species_taxid": 1067, "relation_to_type": "type", "validated": true, "ani": 77.8518, "matched_fragments": 193, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=47Lol = DSM 12138", "accession": "GCA_000310205.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 77.6013, "matched_fragments": 198, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 77.5732, "matched_fragments": 209, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter sedimenti", "strain": "strain=HX-7-9", "accession": "GCA_010435965.1", "taxid": 2705474, "species_taxid": 2705474, "relation_to_type": "type", "validated": true, "ani": 77.5366, "matched_fragments": 188, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter intestini", "strain": "strain=GY 70310", "accession": "GCA_004919095.1", "taxid": 2563443, "species_taxid": 2563443, "relation_to_type": "type", "validated": true, "ani": 77.5249, "matched_fragments": 186, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinimonas koreensis", "strain": "strain=DSM 17726", "accession": "GCA_000428465.1", "taxid": 356302, "species_taxid": 356302, "relation_to_type": "type", "validated": true, "ani": 77.5165, "matched_fragments": 285, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus nantongensis", "strain": "strain=X1", "accession": "GCA_001598055.1", "taxid": 1796606, "species_taxid": 1796606, "relation_to_type": "type", "validated": true, "ani": 77.4686, "matched_fragments": 244, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ferrigenium kumadai", "strain": "strain=An22", "accession": "GCA_018324385.1", "taxid": 1682490, "species_taxid": 1682490, "relation_to_type": "type", "validated": true, "ani": 77.31, "matched_fragments": 170, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vogesella indigofera", "strain": "strain=DSM 3303", "accession": "GCA_003633895.1", "taxid": 45465, "species_taxid": 45465, "relation_to_type": "type", "validated": true, "ani": 77.2056, "matched_fragments": 181, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuricella denitrificans", "strain": "strain=skB26", "accession": "GCA_000297055.2", "taxid": 649841, "species_taxid": 649841, "relation_to_type": "type", "validated": true, "ani": 77.1445, "matched_fragments": 147, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia forsythiae", "strain": "strain=GN2-R2", "accession": "GCA_012849555.1", "taxid": 2728020, "species_taxid": 2728020, "relation_to_type": "type", "validated": true, "ani": 77.027, "matched_fragments": 241, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zincidurans", "strain": "strain=B6", "accession": "GCA_000731955.1", "taxid": 1178777, "species_taxid": 1178777, "relation_to_type": "type", "validated": true, "ani": 76.7052, "matched_fragments": 86, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas fungivorans", "strain": "strain=Ter6", "accession": "GCA_001584145.1", "taxid": 158899, "species_taxid": 158899, "relation_to_type": "type", "validated": true, "ani": 76.6922, "matched_fragments": 146, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas saccharevitans", "strain": "strain=CGMCC 1.6493", "accession": "GCA_900116405.1", "taxid": 416872, "species_taxid": 416872, "relation_to_type": "type", "validated": true, "ani": 76.0701, "matched_fragments": 106, "total_fragments": 977, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 12.5, "strain_heterogeneity": 66.67 }, "gtdb_result": [ { "accession": "GCA_001897675.1", "gtdb_species": "s__Thiobacillus sp001897675", "ani": 92.1203, "matched_fragments": 650, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.41", "min_intra_species_ani": "95.18", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.76", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000376425.1", "gtdb_species": "s__Thiobacillus denitrificans", "ani": 91.9631, "matched_fragments": 725, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018820765.1", "gtdb_species": "s__Thiobacillus sp018820765", "ani": 85.6417, "matched_fragments": 621, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002256995.1", "gtdb_species": "s__Thiobacillus sp002256995", "ani": 85.284, "matched_fragments": 586, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "97.93", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_003510325.1", "gtdb_species": "s__Thiobacillus sp003510325", "ani": 85.2334, "matched_fragments": 472, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.33", "min_intra_species_ani": "99.33", "mean_intra_species_af": "0.73", "min_intra_species_af": "0.73", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018262815.1", "gtdb_species": "s__Thiobacillus sp018262815", "ani": 85.1917, "matched_fragments": 508, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001530125.1", "gtdb_species": "s__Thiobacillus denitrificans_C", "ani": 85.1844, "matched_fragments": 606, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002403375.1", "gtdb_species": "s__Thiobacillus denitrificans_E", "ani": 84.9219, "matched_fragments": 551, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016195805.1", "gtdb_species": "s__Thiobacillus sp016195805", "ani": 84.8888, "matched_fragments": 597, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001899765.1", "gtdb_species": "s__Thiobacillus sp001899765", "ani": 84.5234, "matched_fragments": 639, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "98.01", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_001899305.1", "gtdb_species": "s__Thiobacillus sp001899305", "ani": 84.2093, "matched_fragments": 618, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.65", "min_intra_species_ani": "95.89", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_002343685.1", "gtdb_species": "s__Thiobacillus denitrificans_A", "ani": 84.1503, "matched_fragments": 561, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000373385.1", "gtdb_species": "s__Thiobacillus thioparus", "ani": 84.0561, "matched_fragments": 605, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018820745.1", "gtdb_species": "s__Thiobacillus sp018820745", "ani": 84.0089, "matched_fragments": 367, "total_fragments": 977, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__Thiobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }