{ "type": "genome", "identifier": "GCA_024708985.1", "organism": "Diaphorobacter sp.", "title": "Diaphorobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Colledge of Environmental Sciences and Engineering, Peking University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024708985.1", "bioproject": "PRJNA848245", "biosample": "SAMN28993235", "wgs_master": "JANJXM000000000.1", "refseq_category": "na", "taxid": "1934310", "species_taxid": "1934310", "organism_name": "Diaphorobacter sp.", "infraspecific_name": "", "isolate": "RS342_metabat.bin.12", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/18", "asm_name": "ASM2470898v1", "submitter": "Colledge of Environmental Sciences and Engineering, Peking University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/708/985/GCA_024708985.1_ASM2470898v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-18", "dateModified": "2022-08-18", "datePublished": "2022-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Diaphorobacter sp." ], "sample_taxid": [ "1934310" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Beijing" ], "sample_host_location_id": [], "data_size": "0.902 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 94.85, "contamination": 8.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3258154", "Number of Sequences": "583", "Longest Sequences (bp)": "35694", "N50 (bp)": "7086", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.3", "Number of CDSs": "2560", "Average Protein Length": "298.6", "Coding Ratio (%)": "70.4", "Number of rRNAs": "0", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidovorax wautersii", "strain": "strain=DSM 27981", "accession": "GCA_900113035.1", "taxid": 1177982, "species_taxid": 1177982, "relation_to_type": "type", "validated": true, "ani": 82.7108, "matched_fragments": 590, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax caeni", "strain": "strain=R-24608", "accession": "GCA_900116825.1", "taxid": 343013, "species_taxid": 343013, "relation_to_type": "type", "validated": true, "ani": 82.431, "matched_fragments": 508, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Melaminivora alkalimesophila", "strain": "strain=DSM 26006", "accession": "GCA_003182375.1", "taxid": 1165852, "species_taxid": 1165852, "relation_to_type": "type", "validated": true, "ani": 82.3764, "matched_fragments": 510, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax caeni", "strain": "strain=R-24608", "accession": "GCA_001298675.1", "taxid": 343013, "species_taxid": 343013, "relation_to_type": "type", "validated": true, "ani": 82.3438, "matched_fragments": 511, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Melaminivora alkalimesophila", "strain": "strain=CY1", "accession": "GCA_000282995.1", "taxid": 1165852, "species_taxid": 1165852, "relation_to_type": "type", "validated": true, "ani": 82.3103, "matched_fragments": 357, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax anthurii", "strain": "strain=CFPB 3232", "accession": "GCA_003269065.1", "taxid": 78229, "species_taxid": 78229, "relation_to_type": "type", "validated": true, "ani": 82.1474, "matched_fragments": 568, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Melaminivora jejuensis", "strain": "strain=KCTC 32230", "accession": "GCA_017811175.1", "taxid": 1267217, "species_taxid": 1267217, "relation_to_type": "type", "validated": true, "ani": 81.8694, "matched_fragments": 524, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax citrulli", "strain": "strain=DSM 17060", "accession": "GCA_900100305.1", "taxid": 80869, "species_taxid": 80869, "relation_to_type": "type", "validated": true, "ani": 81.8567, "matched_fragments": 540, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax oryzae", "strain": "strain=ATCC 19882", "accession": "GCA_000687165.1", "taxid": 862720, "species_taxid": 862720, "relation_to_type": "type", "validated": true, "ani": 81.6044, "matched_fragments": 570, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax avenae subsp. avenae", "strain": "strain=ATCC 19860", "accession": "GCA_000176855.2", "taxid": 80870, "species_taxid": 80867, "relation_to_type": "suspected-type", "validated": true, "ani": 81.5833, "matched_fragments": 569, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas phosphati", "strain": "strain=CGMCC 1.12294", "accession": "GCA_014637085.1", "taxid": 1211803, "species_taxid": 1211803, "relation_to_type": "type", "validated": true, "ani": 81.5731, "matched_fragments": 464, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax cattleyae", "strain": "strain=DSM 17101", "accession": "GCA_900104515.1", "taxid": 80868, "species_taxid": 80868, "relation_to_type": "type", "validated": true, "ani": 81.5471, "matched_fragments": 550, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Delftia acidovorans", "strain": "strain=FDAARGOS_997", "accession": "GCA_016127415.1", "taxid": 80866, "species_taxid": 80866, "relation_to_type": "type", "validated": true, "ani": 81.5467, "matched_fragments": 549, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Delftia acidovorans", "strain": "strain=NBRC 14950", "accession": "GCA_001598795.1", "taxid": 80866, "species_taxid": 80866, "relation_to_type": "type", "validated": true, "ani": 81.5428, "matched_fragments": 553, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas terrae", "strain": "strain=NBRC 106524", "accession": "GCA_001544075.1", "taxid": 673548, "species_taxid": 673548, "relation_to_type": "type", "validated": true, "ani": 81.4126, "matched_fragments": 509, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 81.0505, "matched_fragments": 543, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas aquatica", "strain": "strain=NBRC 14918", "accession": "GCA_000739875.1", "taxid": 225991, "species_taxid": 225991, "relation_to_type": "type", "validated": true, "ani": 80.7329, "matched_fragments": 438, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter caeni", "strain": "strain=NR2-3-3-1", "accession": "GCA_015354245.1", "taxid": 2784387, "species_taxid": 2784387, "relation_to_type": "type", "validated": true, "ani": 80.53, "matched_fragments": 504, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas terrigena", "strain": "strain=NCTC1937", "accession": "GCA_900461435.1", "taxid": 32013, "species_taxid": 32013, "relation_to_type": "type", "validated": true, "ani": 80.5252, "matched_fragments": 472, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoferax aquiterrae", "strain": "strain=KCTC 23314", "accession": "GCA_014652235.1", "taxid": 747304, "species_taxid": 747304, "relation_to_type": "type", "validated": true, "ani": 80.2293, "matched_fragments": 500, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simplicispira metamorpha", "strain": "strain=NBRC 13960", "accession": "GCA_003568725.1", "taxid": 80881, "species_taxid": 80881, "relation_to_type": "type", "validated": true, "ani": 80.197, "matched_fragments": 430, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diaphorobacter aerolatus", "strain": "strain=KACC 16536", "accession": "GCA_014489535.1", "taxid": 1288495, "species_taxid": 1288495, "relation_to_type": "type", "validated": true, "ani": 79.8151, "matched_fragments": 445, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 79.7984, "matched_fragments": 438, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter rhizophilus", "strain": "strain=CCTCC AB2015357", "accession": "GCA_004681965.1", "taxid": 1781167, "species_taxid": 1781167, "relation_to_type": "type", "validated": true, "ani": 79.7365, "matched_fragments": 414, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 79.4018, "matched_fragments": 421, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylophilus ampelinus", "strain": "strain=CFBP 1192", "accession": "GCA_024832295.1", "taxid": 54067, "species_taxid": 54067, "relation_to_type": "type", "validated": true, "ani": 79.2495, "matched_fragments": 368, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter agri", "strain": "strain=G-1-2-2", "accession": "GCA_012927085.1", "taxid": 2728837, "species_taxid": 2728837, "relation_to_type": "type", "validated": true, "ani": 79.2371, "matched_fragments": 439, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 79.2291, "matched_fragments": 411, "total_fragments": 776, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 94.85, "contamination": 8.33, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_003755025.1", "gtdb_species": "s__Diaphorobacter nitroreducens", "ani": 98.2242, "matched_fragments": 742, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Diaphorobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.11", "min_intra_species_ani": "97.62", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.81", "num_clustered_genomes": 15, "status": "conclusive" }, { "accession": "GCF_000204645.1", "gtdb_species": "s__Alicycliphilus denitrificans", "ani": 85.4927, "matched_fragments": 626, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.26", "min_intra_species_ani": "95.80", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.76", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000400995.2", "gtdb_species": "s__MR-S7 sp000400995", "ani": 85.2039, "matched_fragments": 634, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__MR-S7", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.31", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018241405.1", "gtdb_species": "s__Alicycliphilus sp018241405", "ani": 83.8704, "matched_fragments": 574, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.75", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002434305.1", "gtdb_species": "s__Pulveribacter sp002434305", "ani": 83.5257, "matched_fragments": 594, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pulveribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.39", "min_intra_species_ani": "97.21", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018242005.1", "gtdb_species": "s__Alicycliphilus sp018242005", "ani": 83.4853, "matched_fragments": 543, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018240985.1", "gtdb_species": "s__Alicycliphilus sp018240985", "ani": 83.3019, "matched_fragments": 511, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Alicycliphilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.65", "min_intra_species_ani": "99.65", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001725235.1", "gtdb_species": "s__Acidovorax_C sp001725235", "ani": 83.184, "matched_fragments": 555, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.36", "min_intra_species_ani": "96.90", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003013695.1", "gtdb_species": "s__Pulveribacter suum", "ani": 83.1211, "matched_fragments": 583, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pulveribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014489595.1", "gtdb_species": "s__Acidovorax_F monticola", "ani": 83.0796, "matched_fragments": 611, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_F", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003604195.1", "gtdb_species": "s__Giesbergeria lacusdiani", "ani": 82.6976, "matched_fragments": 518, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Giesbergeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900113035.1", "gtdb_species": "s__Acidovorax_A wautersii", "ani": 82.6921, "matched_fragments": 592, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001424265.1", "gtdb_species": "s__Acidovorax_A sp001424265", "ani": 82.2345, "matched_fragments": 568, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003269065.1", "gtdb_species": "s__Acidovorax_A anthurii", "ani": 82.1566, "matched_fragments": 567, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900100305.1", "gtdb_species": "s__Acidovorax_A citrulli", "ani": 81.8903, "matched_fragments": 537, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_017811175.1", "gtdb_species": "s__Melaminivora_A jejuensis", "ani": 81.8735, "matched_fragments": 524, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Melaminivora_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014637085.1", "gtdb_species": "s__Comamonas phosphati", "ani": 81.6081, "matched_fragments": 462, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000176855.2", "gtdb_species": "s__Acidovorax_A avenae", "ani": 81.5589, "matched_fragments": 571, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Acidovorax_A", "ani_circumscription_radius": 95.2137, "mean_intra_species_ani": "96.92", "min_intra_species_ani": "95.92", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.51", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCA_005503335.1", "gtdb_species": "s__SCMQ01 sp005503335", "ani": 80.9409, "matched_fragments": 443, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__SCMQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900461435.1", "gtdb_species": "s__Comamonas terrigena", "ani": 80.551, "matched_fragments": 470, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.97", "min_intra_species_ani": "95.46", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_017998575.1", "gtdb_species": "s__JAGOCV01 sp017998575", "ani": 79.3792, "matched_fragments": 327, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__JAGOCV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014207855.1", "gtdb_species": "s__Comamonas odontotermitis", "ani": 79.1749, "matched_fragments": 388, "total_fragments": 776, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.241, "cell_length": 0.153, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 30.0, "optimum_ph": null, "genome_size": 3598784.444, "gc_content": 66.7, "coding_genes": 3614.0, "rRNA16S_genes": 3.0, "tRNA_genes": 53.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.5, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.5, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Diaphorobacter", "s__Diaphorobacter nitroreducens" ], "_genome_taxon": [ "Diaphorobacter", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Diaphorobacter", "s__Diaphorobacter nitroreducens", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Diaphorobacter", "Diaphorobacter", "nitroreducens" ], "_meo": [ { "id": "MEO_0000688", "label": "river sediment" }, { "id": "MEO_0000082", "label": "river" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }