{ "type": "genome", "identifier": "GCA_024709405.1", "organism": "Acholeplasmataceae bacterium", "title": "Acholeplasmataceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Colledge of Environmental Sciences and Engineering, Peking University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024709405.1", "bioproject": "PRJNA848245", "biosample": "SAMN28993216", "wgs_master": "JANJWT000000000.1", "refseq_category": "na", "taxid": "1898209", "species_taxid": "1898209", "organism_name": "Acholeplasmataceae bacterium", "infraspecific_name": "", "isolate": "RS262_metabat.bin.18", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/18", "asm_name": "ASM2470940v1", "submitter": "Colledge of Environmental Sciences and Engineering, Peking University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/709/405/GCA_024709405.1_ASM2470940v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-18", "dateModified": "2022-08-18", "datePublished": "2022-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Acholeplasmataceae bacterium" ], "sample_taxid": [ "1898209" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Beijing" ], "sample_host_location_id": [], "data_size": "0.459 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1608218", "Number of Sequences": "142", "Longest Sequences (bp)": "83538", "N50 (bp)": "19593", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.2", "Number of CDSs": "1426", "Average Protein Length": "309.6", "Coding Ratio (%)": "82.4", "Number of rRNAs": "1", "Number of tRNAs": "32", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paracholeplasma morum", "strain": "strain=ATCC 33211", "accession": "GCA_016907055.1", "taxid": 264637, "species_taxid": 264637, "relation_to_type": "type", "validated": true, "ani": 78.9828, "matched_fragments": 95, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracholeplasma brassicae", "strain": "strain=O502", "accession": "GCA_000967915.1", "taxid": 61635, "species_taxid": 61635, "relation_to_type": "type", "validated": true, "ani": 77.799, "matched_fragments": 60, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.46, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002441525.1", "gtdb_species": "s__Acholeplasma_E sp002441525", "ani": 97.6809, "matched_fragments": 352, "total_fragments": 470, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__UBA5453;g__Acholeplasma_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002423145.1", "gtdb_species": "s__Acholeplasma_E sp002423145", "ani": 81.6618, "matched_fragments": 210, "total_fragments": 470, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__UBA5453;g__Acholeplasma_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016907055.1", "gtdb_species": "s__Acholeplasma_E morum", "ani": 78.9806, "matched_fragments": 96, "total_fragments": 470, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__UBA5453;g__Acholeplasma_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000967915.1", "gtdb_species": "s__Acholeplasma_C brassicae", "ani": 77.7861, "matched_fragments": 59, "total_fragments": 470, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__UBA5453;g__Acholeplasma_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.52", "min_intra_species_ani": "95.52", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 35.133, "optimum_tmp": 32.333, "optimum_ph": null, "genome_size": 1129154.375, "gc_content": 29.459, "coding_genes": 1029.45, "rRNA16S_genes": 2.222, "tRNA_genes": 35.428, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 0.0, "facultative_respiration": 0.5, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.5, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__Acholeplasmatales", "f__UBA5453", "g__Paracholeplasma", "s__Paracholeplasma manati" ], "_genome_taxon": [ "Acholeplasmataceae", "bacterium", "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__Acholeplasmatales", "f__UBA5453", "g__Paracholeplasma", "s__Paracholeplasma manati", "Bacteria", "Bacillota", "I", "Bacilli", "A", "Acholeplasmatales", "UBA5453", "Paracholeplasma", "Paracholeplasma", "manati" ], "_meo": [ { "id": "MEO_0000688", "label": "river sediment" }, { "id": "MEO_0000082", "label": "river" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }