{ "type": "genome", "identifier": "GCA_024709705.1", "organism": "Flavobacterium sp.", "title": "Flavobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Colledge of Environmental Sciences and Engineering, Peking University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024709705.1", "bioproject": "PRJNA848245", "biosample": "SAMN28993201", "wgs_master": "JANJWE000000000.1", "refseq_category": "na", "taxid": "239", "species_taxid": "239", "organism_name": "Flavobacterium sp.", "infraspecific_name": "", "isolate": "RC343_metabat.bin.17", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/18", "asm_name": "ASM2470970v1", "submitter": "Colledge of Environmental Sciences and Engineering, Peking University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/709/705/GCA_024709705.1_ASM2470970v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-18", "dateModified": "2022-08-18", "datePublished": "2022-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium sp." ], "sample_taxid": [ "239" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Beijing" ], "sample_host_location_id": [], "data_size": "0.638 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 89.81, "contamination": 2.08, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2261335", "Number of Sequences": "341", "Longest Sequences (bp)": "22810", "N50 (bp)": "8101", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.3", "Number of CDSs": "1726", "Average Protein Length": "313.5", "Coding Ratio (%)": "71.8", "Number of rRNAs": "2", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium filum", "strain": "strain=DSM 17961", "accession": "GCA_000425465.1", "taxid": 370974, "species_taxid": 370974, "relation_to_type": "type", "validated": true, "ani": 83.3971, "matched_fragments": 371, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscinae", "strain": "strain=ICH-30", "accession": "GCA_004122145.1", "taxid": 2506424, "species_taxid": 2506424, "relation_to_type": "type", "validated": true, "ani": 82.5487, "matched_fragments": 352, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium orientale", "strain": "strain=CGMCC 1.12506", "accession": "GCA_014638005.1", "taxid": 1756020, "species_taxid": 1756020, "relation_to_type": "type", "validated": true, "ani": 80.435, "matched_fragments": 300, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lacus", "strain": "strain=CGMCC 1.12504", "accession": "GCA_003268815.1", "taxid": 1353778, "species_taxid": 1353778, "relation_to_type": "type", "validated": true, "ani": 80.4226, "matched_fragments": 335, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 77.4341, "matched_fragments": 159, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=DSM 6368", "accession": "GCA_900142715.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 77.4185, "matched_fragments": 103, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soli", "strain": "strain=DSM 19725", "accession": "GCA_000422705.1", "taxid": 344881, "species_taxid": 344881, "relation_to_type": "type", "validated": true, "ani": 77.4159, "matched_fragments": 123, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cauense", "strain": "strain=CGMCC 1.7270", "accession": "GCA_007830385.1", "taxid": 510946, "species_taxid": 510946, "relation_to_type": "type", "validated": true, "ani": 77.401, "matched_fragments": 105, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cauense", "strain": "strain=R2A-7", "accession": "GCA_000498475.1", "taxid": 510946, "species_taxid": 510946, "relation_to_type": "type", "validated": true, "ani": 77.3947, "matched_fragments": 105, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=ATCC 19366", "accession": "GCA_002217365.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 77.3617, "matched_fragments": 105, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.3306, "matched_fragments": 86, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 77.3048, "matched_fragments": 78, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium profundi", "strain": "strain=TP390", "accession": "GCA_009753805.1", "taxid": 1774945, "species_taxid": 1774945, "relation_to_type": "type", "validated": true, "ani": 77.289, "matched_fragments": 128, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium profundi", "strain": "strain=TP390", "accession": "GCA_006491645.1", "taxid": 1774945, "species_taxid": 1774945, "relation_to_type": "type", "validated": true, "ani": 77.289, "matched_fragments": 128, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.2665, "matched_fragments": 94, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium glaciei", "strain": "strain=DSM 19728", "accession": "GCA_003350545.1", "taxid": 386300, "species_taxid": 386300, "relation_to_type": "type", "validated": true, "ani": 77.2494, "matched_fragments": 100, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium succinicans", "strain": "strain=DSM 4002", "accession": "GCA_900114945.1", "taxid": 29536, "species_taxid": 29536, "relation_to_type": "type", "validated": true, "ani": 77.1706, "matched_fragments": 116, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium flevense", "strain": "strain=NBRC 14960", "accession": "GCA_006539745.1", "taxid": 983, "species_taxid": 983, "relation_to_type": "type", "validated": true, "ani": 77.0745, "matched_fragments": 110, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium saccharophilum", "strain": "strain=DSM 1811", "accession": "GCA_900142735.1", "taxid": 29534, "species_taxid": 29534, "relation_to_type": "type", "validated": true, "ani": 77.0708, "matched_fragments": 117, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium terrae", "strain": "strain=DSM 18829", "accession": "GCA_900142035.1", "taxid": 415425, "species_taxid": 415425, "relation_to_type": "type", "validated": true, "ani": 76.9895, "matched_fragments": 114, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 76.8777, "matched_fragments": 125, "total_fragments": 582, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 89.81, "contamination": 2.08, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_017302935.1", "gtdb_species": "s__Flavobacterium sp017302935", "ani": 83.5852, "matched_fragments": 339, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000425465.1", "gtdb_species": "s__Flavobacterium filum", "ani": 83.3732, "matched_fragments": 372, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004122145.1", "gtdb_species": "s__Flavobacterium piscinae", "ani": 82.5487, "matched_fragments": 352, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.76", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002352205.1", "gtdb_species": "s__Flavobacterium sp002352205", "ani": 80.8621, "matched_fragments": 356, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014638005.1", "gtdb_species": "s__Flavobacterium orientale", "ani": 80.435, "matched_fragments": 300, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003268815.1", "gtdb_species": "s__Flavobacterium lacus", "ani": 80.4226, "matched_fragments": 335, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002428305.1", "gtdb_species": "s__Flavobacterium sp002428305", "ani": 80.0127, "matched_fragments": 292, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013822155.1", "gtdb_species": "s__Flavobacterium sp013822155", "ani": 79.478, "matched_fragments": 290, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000498475.1", "gtdb_species": "s__Flavobacterium cauense", "ani": 77.3947, "matched_fragments": 105, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_006491645.1", "gtdb_species": "s__Flavobacterium sp006491645", "ani": 77.289, "matched_fragments": 128, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_903888655.1", "gtdb_species": "s__Flavobacterium sp903888655", "ani": 77.0969, "matched_fragments": 101, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018413465.1", "gtdb_species": "s__Flavobacterium sp018413465", "ani": 77.0565, "matched_fragments": 87, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903819815.1", "gtdb_species": "s__Flavobacterium sp903819815", "ani": 76.476, "matched_fragments": 87, "total_fragments": 582, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.326, "cell_length": 0.278, "doubling_h": 1.271, "growth_tmp": 24.705, "optimum_tmp": 25.047, "optimum_ph": 7.141, "genome_size": 3988255.815, "gc_content": 34.893, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.049, "anaerobic_respiration": 0.019, "aerobic_respiration": 0.931, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Flavobacterium", "s__Flavobacterium sp024709705" ], "_genome_taxon": [ "Flavobacterium", "sp.", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Flavobacterium", "s__Flavobacterium sp024709705", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "Flavobacterium", "Flavobacterium", "sp024709705" ], "_meo": [ { "id": "MEO_0000688", "label": "river sediment" }, { "id": "MEO_0000082", "label": "river" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }