{
    "type": "genome",
    "identifier": "GCA_024710005.1",
    "organism": "Paludibacter sp.",
    "title": "Paludibacter sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Colledge of Environmental Sciences and Engineering, Peking University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_024710005.1",
        "bioproject": "PRJNA848245",
        "biosample": "SAMN28993187",
        "wgs_master": "JANJVQ000000000.1",
        "refseq_category": "na",
        "taxid": "1898105",
        "species_taxid": "1898105",
        "organism_name": "Paludibacter sp.",
        "infraspecific_name": "",
        "isolate": "RC263_metabat.bin.35",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/08/18",
        "asm_name": "ASM2471000v1",
        "submitter": "Colledge of Environmental Sciences and Engineering, Peking University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/710/005/GCA_024710005.1_ASM2471000v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-08-18",
    "dateModified": "2022-08-18",
    "datePublished": "2022-08-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paludibacter sp."
        ],
        "sample_taxid": [
            "1898105"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Beijing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.923 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3242810",
        "Number of Sequences": "36",
        "Longest Sequences (bp)": "402837",
        "N50 (bp)": "114304",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "41.1",
        "Number of CDSs": "2532",
        "Average Protein Length": "386.5",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "1",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paludibacter propionicigenes",
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                "accession": "GCA_000183135.1",
                "taxid": 185300,
                "species_taxid": 185300,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 84,
                "total_fragments": 1061,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002070265.1",
                "gtdb_species": "s__Paludibacter sp002070265",
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                "matched_fragments": 118,
                "total_fragments": 1061,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001898935.1",
                "gtdb_species": "s__Paludibacter sp001898935",
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                "matched_fragments": 127,
                "total_fragments": 1061,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_009929375.1",
                "gtdb_species": "s__Paludibacter sp009929375",
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                "matched_fragments": 117,
                "total_fragments": 1061,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000183135.1",
                "gtdb_species": "s__Paludibacter propionicigenes",
                "ani": 76.9737,
                "matched_fragments": 83,
                "total_fragments": 1061,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002427615.1",
                "gtdb_species": "s__Paludibacter sp002427615",
                "ani": 76.9415,
                "matched_fragments": 97,
                "total_fragments": 1061,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.75",
                "mean_intra_species_af": "0.80",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_903929065.1",
                "gtdb_species": "s__Paludibacter sp903929065",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017860345.1",
                "gtdb_species": "s__Paludibacter sp017860345",
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                "matched_fragments": 87,
                "total_fragments": 1061,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903901975.1",
                "gtdb_species": "s__Paludibacter sp903901975",
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                "matched_fragments": 74,
                "total_fragments": 1061,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.88",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 6,
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            },
            {
                "accession": "GCA_016937795.1",
                "gtdb_species": "s__Paludibacter sp016937795",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_015654525.1",
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                "matched_fragments": 54,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Paludibacteraceae;g__Paludibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
            {
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            },
            {
                "accession": "GCA_010365115.1",
                "gtdb_species": "s__Paludibacter sp010365115",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_903873355.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.113,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 30.0,
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        "gc_content": 39.1,
        "coding_genes": 2985.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 53.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Paludibacteraceae",
        "g__Paludibacter",
        "s__Paludibacter sp024710005"
    ],
    "_genome_taxon": [
        "Paludibacter",
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        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Paludibacteraceae",
        "g__Paludibacter",
        "s__Paludibacter sp024710005",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Paludibacteraceae",
        "Paludibacter",
        "Paludibacter",
        "sp024710005"
    ],
    "_meo": [
        {
            "id": "MEO_0000688",
            "label": "river sediment"
        },
        {
            "id": "MEO_0000082",
            "label": "river"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}