{ "type": "genome", "identifier": "GCA_024710185.1", "organism": "Thiobacillus sp.", "title": "Thiobacillus sp.", "description": "derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "Colledge of Environmental Sciences and Engineering, Peking University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024710185.1", "bioproject": "PRJNA848245", "biosample": "SAMN28993176", "wgs_master": "JANJVF000000000.1", "refseq_category": "na", "taxid": "924", "species_taxid": "924", "organism_name": "Thiobacillus sp.", "infraspecific_name": "", "isolate": "co_assembly_metabat.bin.3", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/18", "asm_name": "ASM2471018v1", "submitter": "Colledge of Environmental Sciences and Engineering, Peking University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/710/185/GCA_024710185.1_ASM2471018v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-18", "dateModified": "2022-08-18", "datePublished": "2022-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Thiobacillus sp." ], "sample_taxid": [ "924" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Beijing" ], "sample_host_location_id": [], "data_size": "0.644 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.98, "contamination": 3.01, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2310489", "Number of Sequences": "555", "Longest Sequences (bp)": "21273", "N50 (bp)": "4799", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.9", "Number of CDSs": "1846", "Average Protein Length": "275.6", "Coding Ratio (%)": "66.0", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thiobacillus denitrificans", "strain": "strain=DSM 12475", "accession": "GCA_000376425.1", "taxid": 36861, "species_taxid": 36861, "relation_to_type": "type", "validated": true, "ani": 82.0547, "matched_fragments": 346, "total_fragments": 479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiobacillus thioparus", "strain": "strain=DSM 505", "accession": "GCA_000373385.1", "taxid": 931, "species_taxid": 931, "relation_to_type": "type", "validated": true, "ani": 81.2479, "matched_fragments": 313, "total_fragments": 479, "ani_threshold": 95, "status": 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"strain": "strain=skT11", "accession": "GCA_011764585.1", "taxid": 2715678, "species_taxid": 2715678, "relation_to_type": "type", "validated": true, "ani": 77.5261, "matched_fragments": 130, "total_fragments": 479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 77.5238, "matched_fragments": 136, "total_fragments": 479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus cauae", "strain": "strain=MKL-01", "accession": "GCA_008632125.1", "taxid": 2608999, "species_taxid": 2608999, "relation_to_type": "type", "validated": true, "ani": 77.3542, "matched_fragments": 128, "total_fragments": 479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": 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