{ "type": "genome", "identifier": "GCA_024710195.1", "organism": "Candidatus Riflebacteria bacterium", "title": "Candidatus Riflebacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Colledge of Environmental Sciences and Engineering, Peking University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024710195.1", "bioproject": "PRJNA848245", "biosample": "SAMN28993178", "wgs_master": "JANJVH000000000.1", "refseq_category": "na", "taxid": "2053586", "species_taxid": "2053586", "organism_name": "Candidatus Riflebacteria bacterium", "infraspecific_name": "", "isolate": "RC261_metabat.bin.39", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/18", "asm_name": "ASM2471019v1", "submitter": "Colledge of Environmental Sciences and Engineering, Peking University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/710/195/GCA_024710195.1_ASM2471019v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-18", "dateModified": "2022-08-18", "datePublished": "2022-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Riflebacteria bacterium" ], "sample_taxid": [ "2053586" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Beijing" ], "sample_host_location_id": [], "data_size": "1.396 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4915280", "Number of Sequences": "224", "Longest Sequences (bp)": "129399", "N50 (bp)": "39913", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.0", "Number of CDSs": "3728", "Average Protein Length": "380.1", "Coding Ratio (%)": "86.5", "Number of rRNAs": "2", "Number of tRNAs": "41", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_009917695.1", "gtdb_species": "s__Rifleibacterium amylolyticum", "ani": 77.873, "matched_fragments": 414, "total_fragments": 1527, "gtdb_taxonomy": "d__Bacteria;p__Riflebacteria;c__Ozemobacteria;o__Ozemobacterales;f__Ozemobacteraceae;g__Rifleibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.28", "min_intra_species_ani": "97.28", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002839445.1", "gtdb_species": "s__Rifleibacterium sp002839445", "ani": 77.7208, "matched_fragments": 359, "total_fragments": 1527, "gtdb_taxonomy": "d__Bacteria;p__Riflebacteria;c__Ozemobacteria;o__Ozemobacterales;f__Ozemobacteraceae;g__Rifleibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.65", "min_intra_species_ani": "95.65", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_009928855.1", "gtdb_species": "s__Rifleibacterium sp009928855", "ani": 77.7045, "matched_fragments": 243, "total_fragments": 1527, "gtdb_taxonomy": "d__Bacteria;p__Riflebacteria;c__Ozemobacteria;o__Ozemobacterales;f__Ozemobacteraceae;g__Rifleibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002839435.1", "gtdb_species": "s__Rifleibacterium sp002839435", "ani": 77.434, "matched_fragments": 329, "total_fragments": 1527, "gtdb_taxonomy": "d__Bacteria;p__Riflebacteria;c__Ozemobacteria;o__Ozemobacterales;f__Ozemobacteraceae;g__Rifleibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001787855.1", "gtdb_species": "s__Rifleibacterium sp001787855", "ani": 77.3419, "matched_fragments": 295, "total_fragments": 1527, "gtdb_taxonomy": "d__Bacteria;p__Riflebacteria;c__Ozemobacteria;o__Ozemobacterales;f__Ozemobacteraceae;g__Rifleibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018818125.1", "gtdb_species": "s__Rifleibacterium sp018818125", "ani": 77.2566, "matched_fragments": 243, "total_fragments": 1527, "gtdb_taxonomy": "d__Bacteria;p__Riflebacteria;c__Ozemobacteria;o__Ozemobacterales;f__Ozemobacteraceae;g__Rifleibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012517355.1", "gtdb_species": "s__Ozemobacter sp012517355", "ani": 76.2936, "matched_fragments": 68, "total_fragments": 1527, "gtdb_taxonomy": "d__Bacteria;p__Riflebacteria;c__Ozemobacteria;o__Ozemobacterales;f__Ozemobacteraceae;g__Ozemobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017998915.1", "gtdb_species": "s__MWAR01 sp017998915", "ani": 76.1764, "matched_fragments": 57, "total_fragments": 1527, "gtdb_taxonomy": "d__Bacteria;p__Riflebacteria;c__Ozemobacteria;o__Ozemobacterales;f__Ozemobacteraceae;g__MWAR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Riflebacteria", "c__Ozemobacteria", "o__Ozemobacterales", "f__Ozemobacteraceae", "g__Rifleibacterium", "s__Rifleibacterium sp024710355" ], "_genome_taxon": [ "Candidatus", "Riflebacteria", "bacterium", "d__Bacteria", "p__Riflebacteria", "c__Ozemobacteria", "o__Ozemobacterales", "f__Ozemobacteraceae", "g__Rifleibacterium", "s__Rifleibacterium sp024710355", "Bacteria", "Riflebacteria", "Ozemobacteria", "Ozemobacterales", "Ozemobacteraceae", "Rifleibacterium", "Rifleibacterium", "sp024710355" ], "_meo": [ { "id": "MEO_0000688", "label": "river sediment" }, { "id": "MEO_0000082", "label": "river" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }