{ "type": "genome", "identifier": "GCA_024710985.1", "organism": "Solirubrobacteraceae bacterium", "title": "Solirubrobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Colledge of Environmental Sciences and Engineering, Peking University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024710985.1", "bioproject": "PRJNA848245", "biosample": "SAMN28990813", "wgs_master": "JANJTS000000000.1", "refseq_category": "na", "taxid": "2586742", "species_taxid": "2586742", "organism_name": "Solirubrobacteraceae bacterium", "infraspecific_name": "", "isolate": "RX2_metabat.bin.43", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/18", "asm_name": "ASM2471098v1", "submitter": "Colledge of Environmental Sciences and Engineering, Peking University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/710/985/GCA_024710985.1_ASM2471098v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-18", "dateModified": "2022-08-18", "datePublished": "2022-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Solirubrobacteraceae bacterium" ], "sample_taxid": [ "2586742" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Beijing" ], "sample_host_location_id": [], "data_size": "0.761 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2877398", "Number of Sequences": "480", "Longest Sequences (bp)": "32194", "N50 (bp)": "6844", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.4", "Number of CDSs": "2433", "Average Protein Length": "301.1", "Coding Ratio (%)": "76.4", "Number of rRNAs": "0", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Capillimicrobium parvum", "strain": "strain=0166_1", "accession": "GCA_021172045.1", "taxid": 2884022, "species_taxid": 2884022, "relation_to_type": "type", "validated": true, "ani": 81.7716, "matched_fragments": 512, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 78.4778, "matched_fragments": 361, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Baekduia soli", "strain": "strain=BR7-21", "accession": "GCA_007970665.1", "taxid": 496014, "species_taxid": 496014, "relation_to_type": "type", "validated": true, "ani": 78.4201, "matched_fragments": 422, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 78.3892, "matched_fragments": 428, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 78.3672, "matched_fragments": 431, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 77.5965, "matched_fragments": 377, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter minatonensis", "strain": "strain=DSM 18081", "accession": "GCA_000519325.1", "taxid": 298163, "species_taxid": 298163, "relation_to_type": "type", "validated": true, "ani": 77.041, "matched_fragments": 310, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidimonas sediminis", "strain": "strain=YIM 72259", "accession": "GCA_007556605.1", "taxid": 2588941, "species_taxid": 2588941, "relation_to_type": "type", "validated": true, "ani": 75.2425, "matched_fragments": 100, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. insidiosus", "strain": "strain=CFBP 2404", "accession": "GCA_003693415.1", "taxid": 33014, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 75.1409, "matched_fragments": 126, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces hippuratus", "strain": "strain=DSM 8598", "accession": "GCA_013410355.1", "taxid": 286438, "species_taxid": 286438, "relation_to_type": "type", "validated": true, "ani": 75.0998, "matched_fragments": 142, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cerinus subsp. cerinus", "strain": "strain=DSM 8595", "accession": "GCA_900142065.1", "taxid": 232089, "species_taxid": 33878, "relation_to_type": "type", "validated": true, "ani": 75.0191, "matched_fragments": 132, "total_fragments": 721, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ 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