{ "type": "genome", "identifier": "GCA_024711045.1", "organism": "Planctomycetota bacterium", "title": "Planctomycetota bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Colledge of Environmental Sciences and Engineering, Peking University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024711045.1", "bioproject": "PRJNA848245", "biosample": "SAMN28990812", "wgs_master": "JANJTR000000000.1", "refseq_category": "na", "taxid": "2026780", "species_taxid": "2026780", "organism_name": "Planctomycetota bacterium", "infraspecific_name": "", "isolate": "RX2_metabat.bin.36", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/18", "asm_name": "ASM2471104v1", "submitter": "Colledge of Environmental Sciences and Engineering, Peking University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/711/045/GCA_024711045.1_ASM2471104v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-18", "dateModified": "2022-08-18", "datePublished": "2022-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Planctomycetota bacterium" ], "sample_taxid": [ "2026780" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Beijing" ], "sample_host_location_id": [], "data_size": "2.238 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "8607458", "Number of Sequences": "1030", "Longest Sequences (bp)": "80206", "N50 (bp)": "10311", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.5", "Number of CDSs": "6112", "Average Protein Length": "352.6", "Coding Ratio (%)": "75.1", "Number of rRNAs": "3", "Number of tRNAs": "91", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 75.0492, "matched_fragments": 650, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera soli", "strain": "strain=JC670", "accession": "GCA_011064595.1", "taxid": 2712865, "species_taxid": 2712865, "relation_to_type": "type", "validated": true, "ani": 74.9995, "matched_fragments": 493, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisphaera giovannonii", "strain": "strain=OJF2", "accession": "GCA_008087625.1", "taxid": 406548, "species_taxid": 406548, "relation_to_type": "type", "validated": true, "ani": 74.9534, "matched_fragments": 551, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatirosa kalamazoonensis", "strain": "strain=KBS708", "accession": "GCA_000522985.1", "taxid": 861299, "species_taxid": 861299, "relation_to_type": "type", "validated": true, "ani": 74.9507, "matched_fragments": 741, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera rhizosphaereae", "strain": "strain=JC665", "accession": "GCA_011065895.1", "taxid": 2711216, "species_taxid": 2711216, "relation_to_type": "type", "validated": true, "ani": 74.9317, "matched_fragments": 258, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 74.9227, "matched_fragments": 641, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halorhodospira neutriphila", "strain": "strain=DSM 15116", "accession": "GCA_016584055.1", "taxid": 168379, "species_taxid": 168379, "relation_to_type": "type", "validated": true, "ani": 74.9217, "matched_fragments": 233, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter rhizosphaerae", "strain": "strain=DSM 45622", "accession": "GCA_004216915.1", "taxid": 598652, "species_taxid": 598652, "relation_to_type": "type", "validated": true, "ani": 74.9059, "matched_fragments": 522, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus sediminis", "strain": "strain=NS18", "accession": "GCA_007923295.1", "taxid": 2599924, "species_taxid": 2599924, "relation_to_type": "type", "validated": true, "ani": 74.8772, "matched_fragments": 409, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora alba", "strain": "strain=YIM 90003", "accession": "GCA_000826685.1", "taxid": 183763, "species_taxid": 183763, "relation_to_type": "type", "validated": true, "ani": 74.8739, "matched_fragments": 384, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea solisilvae", "strain": "strain=KACC 19191", "accession": "GCA_016464425.1", "taxid": 2072922, "species_taxid": 2072922, "relation_to_type": "type", "validated": true, "ani": 74.8738, "matched_fragments": 607, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tautonia plasticadhaerens", "strain": "strain=ElP", "accession": "GCA_007752535.1", "taxid": 2527974, "species_taxid": 2527974, "relation_to_type": "type", "validated": true, "ani": 74.8704, "matched_fragments": 435, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 74.8688, "matched_fragments": 592, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus jejuensis", "strain": "strain=DSM 22002", "accession": "GCA_900099705.1", "taxid": 399736, "species_taxid": 399736, "relation_to_type": "type", "validated": true, "ani": 74.8642, "matched_fragments": 457, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 74.8511, "matched_fragments": 689, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudokineococcus lusitanus", "strain": "strain=CECT 7306", "accession": "GCA_003751265.1", "taxid": 763993, "species_taxid": 763993, "relation_to_type": "type", "validated": true, "ani": 74.8465, "matched_fragments": 581, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus pavilionensis", "strain": "strain=RW1", "accession": "GCA_000400485.1", "taxid": 1346502, "species_taxid": 1346502, "relation_to_type": "type", "validated": true, "ani": 74.8436, "matched_fragments": 416, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinimicrobium flavum", "strain": "strain=CPCC 203535", "accession": "GCA_004526345.1", "taxid": 1288636, "species_taxid": 1288636, "relation_to_type": "type", "validated": true, "ani": 74.8312, "matched_fragments": 259, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas persica", "strain": "strain=NBRC 101101", "accession": "GCA_007989825.1", "taxid": 76861, "species_taxid": 76861, "relation_to_type": "type", "validated": true, "ani": 74.8279, "matched_fragments": 475, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter spongiae", "strain": "strain=119BY6-57", "accession": "GCA_014145325.1", "taxid": 2025720, "species_taxid": 2025720, "relation_to_type": "type", "validated": true, "ani": 74.8263, "matched_fragments": 228, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pimelobacter simplex", "strain": "strain=ATCC 6946", "accession": "GCA_900114845.1", "taxid": 2045, "species_taxid": 2045, "relation_to_type": "type", "validated": true, "ani": 74.8222, "matched_fragments": 587, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pimelobacter simplex", "strain": "strain=NBRC 12069", "accession": "GCA_006538965.1", "taxid": 2045, "species_taxid": 2045, "relation_to_type": "type", "validated": true, "ani": 74.8214, "matched_fragments": 593, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachybacterium nesterenkovii", "strain": "strain=CIP104813", "accession": "GCA_900163655.1", "taxid": 47847, "species_taxid": 47847, "relation_to_type": "type", "validated": true, "ani": 74.81, "matched_fragments": 288, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium helvum", "strain": "strain=NEAU-LLC", "accession": "GCA_014779795.1", "taxid": 2773713, "species_taxid": 2773713, "relation_to_type": "type", "validated": true, "ani": 74.7735, "matched_fragments": 322, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mediolanus", "strain": "strain=JCM 3346", "accession": "GCA_014648575.1", "taxid": 41986, "species_taxid": 41986, "relation_to_type": "type", "validated": true, "ani": 74.7686, "matched_fragments": 452, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter intestinalis", "strain": "strain=2DFWR-13", "accession": "GCA_003627075.1", "taxid": 2419774, "species_taxid": 2419774, "relation_to_type": "type", "validated": true, "ani": 74.7555, "matched_fragments": 314, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis circi", "strain": "strain=DSM 45561", "accession": "GCA_003385235.1", "taxid": 871959, "species_taxid": 871959, "relation_to_type": "type", "validated": true, "ani": 74.727, "matched_fragments": 373, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinithermus hydrothermalis", "strain": "strain=DSM 14884", "accession": "GCA_000195335.1", "taxid": 186192, "species_taxid": 186192, "relation_to_type": "type", "validated": true, "ani": 74.7084, "matched_fragments": 90, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium halophytorum", "strain": "strain=YJYP 303", "accession": "GCA_002970975.1", "taxid": 2067568, "species_taxid": 2067568, "relation_to_type": "type", "validated": true, "ani": 74.7066, "matched_fragments": 315, "total_fragments": 2346, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 2.08, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003695705.1", "gtdb_species": "s__J058 sp003695705", "ani": 76.0009, "matched_fragments": 669, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__J058;o__J058;f__J058;g__J058", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016765095.1", "gtdb_species": "s__NORP233 sp016765095", "ani": 75.6024, "matched_fragments": 367, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__J058;o__J058;f__J058;g__NORP233", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016200955.1", "gtdb_species": "s__JACQDU01 sp016200955", "ani": 75.4878, "matched_fragments": 418, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__J058;o__J058;f__JACQDU01;g__JACQDU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016872675.1", "gtdb_species": "s__UBA2386 sp016872675", "ani": 75.0103, "matched_fragments": 391, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA2386;f__UBA2386;g__UBA2386", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004376375.1", "gtdb_species": "s__E44-bin39 sp004376375", "ani": 75.0044, "matched_fragments": 73, "total_fragments": 2346, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__E44-bin39;o__E44-bin39;f__E44-bin39;g__E44-bin39", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018883105.1", "gtdb_species": 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