{ "type": "genome", "identifier": "GCA_024742855.1", "organism": "Alteromonadaceae bacterium", "title": "Alteromonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Zhejiang Ocean University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024742855.1", "bioproject": "PRJNA820338", "biosample": "SAMN27010642", "wgs_master": "JANSXQ000000000.1", "refseq_category": "na", "taxid": "1916082", "species_taxid": "1916082", "organism_name": "Alteromonadaceae bacterium", "infraspecific_name": "", "isolate": "bin.29", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/08/25", "asm_name": "ASM2474285v1", "submitter": "Zhejiang Ocean University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/742/855/GCA_024742855.1_ASM2474285v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-08-25", "dateModified": "2022-08-25", "datePublished": "2022-08-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonadaceae bacterium" ], "sample_taxid": [ "1916082" ], "sample_host_organism": [ "Alexandrium tamarense" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.214 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4266083", "Number of Sequences": "28", "Longest Sequences (bp)": "1027690", "N50 (bp)": "409090", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.2", "Number of CDSs": "3945", "Average Protein Length": "325.9", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter adhaerens", "strain": "strain=HP15", "accession": "GCA_000166295.1", "taxid": 1033846, "species_taxid": 1033846, "relation_to_type": "type", "validated": true, "ani": 98.1121, "matched_fragments": 1274, "total_fragments": 1407, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=LMG 23834", "accession": "GCA_002933295.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 96.5626, "matched_fragments": 1193, "total_fragments": 1407, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Marinobacter flavimaris", "strain": "strain=KCTC 12185", "accession": "GCA_003363485.1", "taxid": 262076, "species_taxid": 262076, "relation_to_type": "type", "validated": true, "ani": 96.5318, "matched_fragments": 1198, "total_fragments": 1407, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Marinobacter maroccanus", "strain": "strain=N4", "accession": "GCA_002933275.1", "taxid": 2055143, "species_taxid": 2055143, "relation_to_type": "type", "validated": true, "ani": 87.787, "matched_fragments": 1119, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter subterrani", "strain": "strain=JG233", "accession": "GCA_001045555.1", "taxid": 1658765, "species_taxid": 1658765, "relation_to_type": "type", "validated": true, "ani": 82.9142, "matched_fragments": 902, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter guineae", "strain": "strain=M3B", "accession": "GCA_002744735.1", "taxid": 432303, "species_taxid": 432303, "relation_to_type": "type", "validated": true, "ani": 82.5441, "matched_fragments": 955, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 81.9827, "matched_fragments": 835, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 80.8171, "matched_fragments": 664, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter goseongensis", "strain": "strain=KCTC 12515", "accession": "GCA_023156235.1", "taxid": 453838, "species_taxid": 453838, "relation_to_type": "type", "validated": true, "ani": 80.6213, "matched_fragments": 574, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter arenosus", "strain": "strain=CAU 1620", "accession": "GCA_019264345.1", "taxid": 2856822, "species_taxid": 2856822, "relation_to_type": "type", "validated": true, "ani": 80.5347, "matched_fragments": 724, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 79.629, "matched_fragments": 605, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 78.6271, "matched_fragments": 428, "total_fragments": 1407, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000166295.1", "gtdb_species": "s__Marinobacter adhaerens", "ani": 98.1121, "matched_fragments": 1274, "total_fragments": 1407, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 96.6719, "mean_intra_species_ani": "98.39", "min_intra_species_ani": "97.71", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.87", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_002933295.1", "gtdb_species": "s__Marinobacter flavimaris", "ani": 96.5626, "matched_fragments": 1193, "total_fragments": 1407, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.47", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_003030785.1", "gtdb_species": "s__Marinobacter sp003030785", "ani": 87.1335, "matched_fragments": 642, "total_fragments": 1407, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009617755.1", "gtdb_species": "s__Marinobacter salsuginis", "ani": 86.7466, "matched_fragments": 1144, "total_fragments": 1407, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.38", "min_intra_species_ani": "96.64", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.80", "num_clustered_genomes": 12, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.212, "cell_length": 0.249, "doubling_h": 0.491, "growth_tmp": 27.917, "optimum_tmp": 27.983, "optimum_ph": 7.563, "genome_size": 4399714.564, "gc_content": 49.602, "coding_genes": 3793.298, "rRNA16S_genes": 4.104, "tRNA_genes": 57.66, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.962, "range_salinity": 1.0, "facultative_respiration": 0.107, "anaerobic_respiration": 0.03, "aerobic_respiration": 0.861, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.981, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.018, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Oleiphilaceae", "g__Marinobacter", "s__Marinobacter adhaerens" ], "_genome_taxon": [ "Alteromonadaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Pseudomonadales", "f__Oleiphilaceae", "g__Marinobacter", "s__Marinobacter adhaerens", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Pseudomonadales", "Oleiphilaceae", "Marinobacter", "Marinobacter", "adhaerens" ], "_meo": [ { "id": "MEO_0000420", "label": "symbiotic microbe" } ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }