{ "type": "genome", "identifier": "GCA_024960155.1", "organism": "Alteromonas macleodii", "title": "Alteromonas macleodii", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "National Oceanic & Atmospheric Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCA_024960155.1", "bioproject": "PRJNA870083", "biosample": "SAMN30350013", "wgs_master": "JANXHA000000000.1", "refseq_category": "na", "taxid": "28108", "species_taxid": "28108", "organism_name": "Alteromonas macleodii", "infraspecific_name": "", "isolate": "Bin02_054", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/05", "asm_name": "ASM2496015v1", "submitter": "National Oceanic & Atmospheric Administration", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/024/960/155/GCA_024960155.1_ASM2496015v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-05", "dateModified": "2022-09-05", "datePublished": "2022-09-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonas macleodii" ], "sample_taxid": [ "28108" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Green Canyon, Gulf of Mexico" ], "sample_host_location_id": [], "data_size": "0.936 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 80.0, "max": 80.0 }, "completeness": 91.67, "contamination": 11.4, "strain_heterogeneity": 33.33, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3218772", "Number of Sequences": "774", "Longest Sequences (bp)": "21923", "N50 (bp)": "5174", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "45.5", "Number of CDSs": "2090", "Average Protein Length": "306.2", "Coding Ratio (%)": "59.7", "Number of rRNAs": "1", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alteromonas macleodii", "strain": "strain=ATCC 27126", "accession": "GCA_000172635.2", "taxid": 28108, "species_taxid": 28108, "relation_to_type": "type", "validated": true, "ani": 98.3533, "matched_fragments": 599, "total_fragments": 635, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Alteromonas abrolhosensis", "strain": "strain=PEL67E", "accession": "GCA_001953635.1", "taxid": 1892904, "species_taxid": 1892904, "relation_to_type": "type", "validated": true, "ani": 89.6696, "matched_fragments": 560, "total_fragments": 635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas portus", "strain": "strain=HB161718", "accession": "GCA_005117025.1", "taxid": 2565549, "species_taxid": 2565549, "relation_to_type": "type", "validated": true, "ani": 88.0742, "matched_fragments": 514, "total_fragments": 635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas mediterranea", "strain": "strain=DE", "accession": "GCA_000020585.3", "taxid": 314275, "species_taxid": 314275, "relation_to_type": "type", "validated": true, "ani": 83.867, "matched_fragments": 442, "total_fragments": 635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas gracilis", "strain": "strain=9a2", "accession": "GCA_002993325.1", "taxid": 1479524, "species_taxid": 1479524, "relation_to_type": "type", "validated": true, "ani": 83.7686, "matched_fragments": 438, "total_fragments": 635, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteromonas australica", "strain": "strain=H 17", "accession": "GCA_000730385.1", "taxid": 589873, "species_taxid": 589873, "relation_to_type": "type", "validated": true, "ani": 81.1761, "matched_fragments": 204, "total_fragments": 635, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 11.4, "strain_heterogeneity": 33.33 }, "gtdb_result": [ { "accession": "GCF_000172635.2", "gtdb_species": "s__Alteromonas macleodii", "ani": 98.3533, "matched_fragments": 599, "total_fragments": 635, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.79", "min_intra_species_ani": "96.10", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.76", "num_clustered_genomes": 56, "status": "conclusive" }, { "accession": "GCF_000808575.1", "gtdb_species": "s__Alteromonas marina", "ani": 92.3842, "matched_fragments": 536, "total_fragments": 635, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001953635.1", "gtdb_species": "s__Alteromonas abrolhosensis", "ani": 89.6696, "matched_fragments": 560, "total_fragments": 635, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.27", "min_intra_species_ani": "97.25", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_005117025.1", "gtdb_species": "s__Alteromonas portus", "ani": 88.0742, 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"gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Alteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "97.41", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.82", "num_clustered_genomes": 24, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.0, "cell_length": 0.301, "doubling_h": null, "growth_tmp": 23.0, "optimum_tmp": 30.0, "optimum_ph": 7.0, "genome_size": 4649682.043, "gc_content": 44.397, "coding_genes": 3874.833, "rRNA16S_genes": 5.0, "tRNA_genes": 65.625, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Alteromonadaceae", "g__Alteromonas", "s__Alteromonas macleodii" ], "_genome_taxon": [ "Alteromonas", "macleodii", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Enterobacterales", "f__Alteromonadaceae", "g__Alteromonas", "s__Alteromonas macleodii", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Enterobacterales", "Alteromonadaceae", "Alteromonas", "Alteromonas", "macleodii" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" }, { "id": "MEO_0001474", "label": "oil associated feature" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }