{ "type": "genome", "identifier": "GCA_025352425.1", "organism": "Flavobacterium sp.", "title": "Flavobacterium sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EPFL", "publication": [ {} ], "properties": { "assembly_accession": "GCA_025352425.1", "bioproject": "PRJNA781406", "biosample": "SAMN30205636", "wgs_master": "JANXTI000000000.1", "refseq_category": "na", "taxid": "239", "species_taxid": "239", "organism_name": "Flavobacterium sp.", "infraspecific_name": "", "isolate": "338R_metabat_4", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/21", "asm_name": "ASM2535242v1", "submitter": "EPFL", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/352/425/GCA_025352425.1_ASM2535242v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-21", "dateModified": "2022-09-21", "datePublished": "2022-09-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium sp." ], "sample_taxid": [ "239" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Uganda: Stanley glacier" ], "sample_host_location_id": [], "data_size": "0.769 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2722226", "Number of Sequences": "104", "Longest Sequences (bp)": "181504", "N50 (bp)": "46401", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.1", "Number of CDSs": "2400", "Average Protein Length": "325.9", "Coding Ratio (%)": "86.2", "Number of rRNAs": "1", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium sangjuense", "strain": "strain=GS03", "accession": "GCA_004797125.1", "taxid": 2518177, "species_taxid": 2518177, "relation_to_type": "type", "validated": true, "ani": 83.9049, "matched_fragments": 641, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium phycosphaerae", "strain": "strain=MK012", "accession": "GCA_010119235.1", "taxid": 2697515, "species_taxid": 2697515, "relation_to_type": "type", "validated": true, "ani": 79.0091, "matched_fragments": 418, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium dankookense", "strain": "strain=DSM 25687", "accession": "GCA_004362665.1", "taxid": 706186, "species_taxid": 706186, "relation_to_type": "type", "validated": true, "ani": 78.6496, "matched_fragments": 341, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=an-8", "accession": "GCA_014486675.1", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 78.4914, "matched_fragments": 350, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=LMG 25203", "accession": "GCA_014385475.2", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 78.415, "matched_fragments": 360, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium solisilvae", "strain": "strain=SE-s27", "accession": "GCA_012911605.1", "taxid": 1852019, "species_taxid": 1852019, "relation_to_type": "type", "validated": true, "ani": 78.3589, "matched_fragments": 358, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium silvisoli", "strain": "strain=RD-2-33", "accession": "GCA_004329815.1", "taxid": 2529433, "species_taxid": 2529433, "relation_to_type": "type", "validated": true, "ani": 78.3267, "matched_fragments": 328, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=ATCC 11947", "accession": "GCA_002217235.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 78.2346, "matched_fragments": 277, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=LMG 4008", "accession": "GCA_000757385.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 78.2184, "matched_fragments": 285, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=NBRC 15052", "accession": "GCA_006539785.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 78.1858, "matched_fragments": 275, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xinjiangense", "strain": "strain=CGMCC 1.2749", "accession": "GCA_900142885.1", "taxid": 178356, "species_taxid": 178356, "relation_to_type": "type", "validated": true, "ani": 77.6233, "matched_fragments": 194, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 77.552, "matched_fragments": 183, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrotolerans", "strain": "strain=RB1R5", "accession": "GCA_003097635.1", "taxid": 2169410, "species_taxid": 2169410, "relation_to_type": "type", "validated": true, "ani": 77.5371, "matched_fragments": 195, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 77.5335, "matched_fragments": 190, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.5105, "matched_fragments": 171, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium 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24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 76.8737, "matched_fragments": 110, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jumunjinense", "strain": "strain=HME7102", "accession": "GCA_021650975.2", "taxid": 998845, "species_taxid": 998845, "relation_to_type": "type", "validated": true, "ani": 76.6572, "matched_fragments": 117, "total_fragments": 854, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004797125.1", "gtdb_species": "s__Flavobacterium sangjuense", "ani": 83.9049, "matched_fragments": 641, "total_fragments": 854, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, 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