{ "type": "genome", "identifier": "GCA_025355995.1", "organism": "Spirochaetaceae bacterium", "title": "Spirochaetaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "EPFL", "publication": [ {} ], "properties": { "assembly_accession": "GCA_025355995.1", "bioproject": "PRJNA781406", "biosample": "SAMN30205959", "wgs_master": "JANXYQ000000000.1", "refseq_category": "na", "taxid": "1898206", "species_taxid": "1898206", "organism_name": "Spirochaetaceae bacterium", "infraspecific_name": "", "isolate": "GL140_3_metabat_65", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/21", "asm_name": "ASM2535599v1", "submitter": "EPFL", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/355/995/GCA_025355995.1_ASM2535599v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-21", "dateModified": "2022-09-21", "datePublished": "2022-09-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Spirochaetaceae bacterium" ], "sample_taxid": [ "1898206" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Uganda: Stanley glacier" ], "sample_host_location_id": [], "data_size": "1.251 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4498889", "Number of Sequences": "138", "Longest Sequences (bp)": "135908", "N50 (bp)": "51744", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "3973", "Average Protein Length": "339.0", "Coding Ratio (%)": "89.8", "Number of rRNAs": "1", "Number of tRNAs": "43", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microvirga subterranea", "strain": "strain=DSM 14364", "accession": "GCA_003350535.1", "taxid": 186651, "species_taxid": 186651, "relation_to_type": "type", "validated": true, "ani": 74.9671, "matched_fragments": 54, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bosea thiooxidans", "strain": "strain=DSM 9653", "accession": "GCA_900168195.1", "taxid": 53254, "species_taxid": 53254, "relation_to_type": "type", "validated": true, "ani": 74.7233, "matched_fragments": 71, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum extorquens", "strain": "strain=TK 0001", "accession": "GCA_900234795.1", "taxid": 408, "species_taxid": 408, "relation_to_type": "type", "validated": true, "ani": 74.7214, "matched_fragments": 89, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum rhodinum", "strain": "strain=DSM 2163", "accession": "GCA_014199935.1", "taxid": 29428, "species_taxid": 29428, "relation_to_type": "type", "validated": true, "ani": 74.7206, "matched_fragments": 84, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum salsuginis", "strain": "strain=CGMCC 1.6474", "accession": "GCA_900114375.1", "taxid": 414703, "species_taxid": 414703, "relation_to_type": "type", "validated": true, "ani": 74.7151, "matched_fragments": 78, "total_fragments": 1429, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium jeotgali", "strain": "strain=LMG 23639", "accession": "GCA_022179345.1", "taxid": 381630, "species_taxid": 381630, 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