{ "type": "genome", "identifier": "GCA_025359665.1", "organism": "Caulobacteraceae bacterium", "title": "Caulobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "EPFL", "publication": [ {} ], "properties": { "assembly_accession": "GCA_025359665.1", "bioproject": "PRJNA781406", "biosample": "SAMN30205714", "wgs_master": "JANYFU000000000.1", "refseq_category": "na", "taxid": "1978230", "species_taxid": "1978230", "organism_name": "Caulobacteraceae bacterium", "infraspecific_name": "", "isolate": "339R_metabinner_86", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/21", "asm_name": "ASM2535966v1", "submitter": "EPFL", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/359/665/GCA_025359665.1_ASM2535966v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-21", "dateModified": "2022-09-21", "datePublished": "2022-09-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Caulobacteraceae bacterium" ], "sample_taxid": [ "1978230" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Uganda: Stanley glacier" ], "sample_host_location_id": [], "data_size": "1.261 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.61, "contamination": 6.25, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4496243", "Number of Sequences": "634", "Longest Sequences (bp)": "52054", "N50 (bp)": "9545", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "3688", "Average Protein Length": "307.5", "Coding Ratio (%)": "75.7", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phenylobacterium hankyongense", "strain": "strain=HKS-05", "accession": "GCA_003254505.1", "taxid": 1813876, "species_taxid": 1813876, "relation_to_type": "type", "validated": true, "ani": 77.7067, "matched_fragments": 287, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium glaciei", "strain": "strain=20VBR1", "accession": "GCA_016772415.2", "taxid": 2803784, "species_taxid": 2803784, "relation_to_type": "type", "validated": true, "ani": 77.6033, "matched_fragments": 255, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium soli", "strain": "strain=LX32", "accession": "GCA_003254475.1", "taxid": 2170551, "species_taxid": 2170551, "relation_to_type": "type", "validated": true, "ani": 77.2894, "matched_fragments": 272, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter flavus", "strain": "strain=RHGG3", "accession": "GCA_003722335.1", "taxid": 1679497, "species_taxid": 1679497, "relation_to_type": "type", "validated": true, "ani": 77.2829, "matched_fragments": 261, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium deserti", "strain": "strain=YIM 73061", "accession": "GCA_003254705.1", "taxid": 1914756, "species_taxid": 1914756, "relation_to_type": "type", "validated": true, "ani": 77.2699, "matched_fragments": 180, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter flavus", "strain": "strain=CGMCC1 15093", "accession": "GCA_002858845.1", "taxid": 1679497, "species_taxid": 1679497, "relation_to_type": "type", "validated": true, "ani": 77.2356, "matched_fragments": 261, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter henricii", "strain": "strain=CB4", "accession": "GCA_001414055.1", "taxid": 69395, "species_taxid": 69395, "relation_to_type": "type", "validated": true, "ani": 77.2122, "matched_fragments": 206, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium zucineum", "strain": "strain=HLK1", "accession": "GCA_000017265.1", "taxid": 284016, "species_taxid": 284016, "relation_to_type": "type", "validated": true, "ani": 77.1929, "matched_fragments": 266, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=KCTC 52515", "accession": "GCA_010977555.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 77.1815, "matched_fragments": 274, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter endophyticus", "strain": "strain=774", "accession": "GCA_003116815.1", "taxid": 2172652, "species_taxid": 2172652, "relation_to_type": "type", "validated": true, "ani": 77.1766, "matched_fragments": 265, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=CGMCC 1.15915", "accession": "GCA_014645055.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 77.1599, "matched_fragments": 272, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium kunshanense", "strain": "strain=BUT-10", "accession": "GCA_003254525.1", "taxid": 1445034, "species_taxid": 1445034, "relation_to_type": "type", "validated": true, "ani": 77.1579, "matched_fragments": 240, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas basaltis", "strain": "strain=DSM 25335", "accession": "GCA_014202075.1", "taxid": 472166, "species_taxid": 472166, "relation_to_type": "type", "validated": true, "ani": 77.1012, "matched_fragments": 147, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium haematophilum", "strain": "strain=DSM 21793", "accession": "GCA_014196295.1", "taxid": 98513, "species_taxid": 98513, "relation_to_type": "type", "validated": true, "ani": 77.0, "matched_fragments": 260, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas fluminis", "strain": "strain=LA-55", "accession": "GCA_003934285.1", "taxid": 2487274, "species_taxid": 2487274, "relation_to_type": "type", "validated": true, "ani": 76.728, "matched_fragments": 145, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus binzhouensis", "strain": "strain=wg1", "accession": "GCA_016446475.1", "taxid": 2796149, "species_taxid": 2796149, "relation_to_type": "type", "validated": true, "ani": 76.0085, "matched_fragments": 105, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylorubrum rhodesianum", "strain": "strain=DSM 5687", "accession": "GCA_014199985.1", "taxid": 29427, "species_taxid": 29427, "relation_to_type": "type", "validated": true, "ani": 75.9403, "matched_fragments": 108, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas gilva", "strain": "strain=ZDH117", "accession": "GCA_003515075.1", "taxid": 2305907, "species_taxid": 2305907, "relation_to_type": "type", "validated": true, "ani": 75.7111, "matched_fragments": 91, "total_fragments": 1151, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizorhabdus 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