{
    "type": "genome",
    "identifier": "GCA_025456005.1",
    "organism": "Solirubrobacteraceae bacterium",
    "title": "Solirubrobacteraceae bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_025456005.1",
        "bioproject": "PRJNA818364",
        "biosample": "SAMN27108483",
        "wgs_master": "JALOLL000000000.1",
        "refseq_category": "na",
        "taxid": "2586742",
        "species_taxid": "2586742",
        "organism_name": "Solirubrobacteraceae bacterium",
        "infraspecific_name": "",
        "isolate": "Prado024",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/28",
        "asm_name": "ASM2545600v1",
        "submitter": "NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/456/005/GCA_025456005.1_ASM2545600v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-28",
    "dateModified": "2022-09-28",
    "datePublished": "2022-09-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Solirubrobacteraceae bacterium"
        ],
        "sample_taxid": [
            "2586742"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Prado Wetlands, Corona, CA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.469 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 60.04,
        "contamination": 4.55,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1784078",
        "Number of Sequences": "467",
        "Longest Sequences (bp)": "12936",
        "N50 (bp)": "3715",
        "Gap Ratio (%)": "0.011042",
        "GCcontent (%)": "74.3",
        "Number of CDSs": "1305",
        "Average Protein Length": "280.9",
        "Coding Ratio (%)": "61.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "31",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paraconexibacter algicola",
                "strain": "strain=Seoho-28",
                "accession": "GCA_003044185.1",
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                "species_taxid": 2133960,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4295,
                "matched_fragments": 225,
                "total_fragments": 355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Baekduia soli",
                "strain": "strain=BR7-21",
                "accession": "GCA_007970665.1",
                "taxid": 496014,
                "species_taxid": 496014,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1842,
                "matched_fragments": 232,
                "total_fragments": 355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capillimicrobium parvum",
                "strain": "strain=0166_1",
                "accession": "GCA_021172045.1",
                "taxid": 2884022,
                "species_taxid": 2884022,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1507,
                "matched_fragments": 227,
                "total_fragments": 355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Conexibacter arvalis",
                "strain": "strain=DSM 23288",
                "accession": "GCA_014199525.1",
                "taxid": 912552,
                "species_taxid": 912552,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9619,
                "matched_fragments": 234,
                "total_fragments": 355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Conexibacter woesei",
                "strain": "strain=DSM 14684",
                "accession": "GCA_000025265.1",
                "taxid": 191495,
                "species_taxid": 191495,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7283,
                "matched_fragments": 243,
                "total_fragments": 355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter medicamentivorans",
                "strain": "strain=I11",
                "accession": "GCA_000240225.2",
                "taxid": 1097667,
                "species_taxid": 1097667,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2726,
                "matched_fragments": 200,
                "total_fragments": 355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Modestobacter altitudinis",
                "strain": "strain=1G4",
                "accession": "GCA_005930475.1",
                "taxid": 2213158,
                "species_taxid": 2213158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0321,
                "matched_fragments": 105,
                "total_fragments": 355,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix algeriensis",
                "strain": "strain=DSM 44581",
                "accession": "GCA_016907655.1",
                "taxid": 173560,
                "species_taxid": 173560,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9959,
                "matched_fragments": 151,
                "total_fragments": 355,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 60.04,
            "contamination": 4.55,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_009699245.1",
                "gtdb_species": "s__F1-60-MAGs163 sp009699245",
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                "matched_fragments": 167,
                "total_fragments": 355,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__F1-60-MAGs163",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009699915.1",
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                "total_fragments": 355,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017084525.1",
                "gtdb_species": "s__Baekduia sp017084525",
                "ani": 78.7733,
                "matched_fragments": 227,
                "total_fragments": 355,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Baekduia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013695395.1",
                "gtdb_species": "s__SEOHO-28 sp013695395",
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                "matched_fragments": 140,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__SEOHO-28",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016463765.1",
                "gtdb_species": "s__SYBY01 sp016463765",
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                "matched_fragments": 173,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__SYBY01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_017882375.1",
                "gtdb_species": "s__Palsa-744 sp017882375",
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                "matched_fragments": 156,
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                "mean_intra_species_ani": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCA_902806205.1",
                "gtdb_species": "s__SEOHO-28 sp902806205",
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                "matched_fragments": 165,
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            },
            {
                "accession": "GCA_009699615.1",
                "gtdb_species": "s__F1-60-MAGs163 sp009699615",
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                "matched_fragments": 56,
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                "accession": "GCA_009699565.1",
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            },
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                "accession": "GCA_005884115.1",
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            {
                "accession": "GCA_903959665.1",
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                "mean_intra_species_ani": "99.27",
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                "num_clustered_genomes": 34,
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            },
            {
                "accession": "GCA_012718975.1",
                "gtdb_species": "s__JAAYBF01 sp012718975",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Thermoleophilaceae;g__JAAYBF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.078,
        "cell_length": 0.161,
        "doubling_h": null,
        "growth_tmp": 27.666,
        "optimum_tmp": 26.5,
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        "genome_size": 8224731.0,
        "gc_content": null,
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        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Actinomycetota",
        "c__Thermoleophilia",
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        "f__Solirubrobacteraceae",
        "g__F1-60-MAGs163",
        "s__F1-60-MAGs163 sp025455895"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Thermoleophilia",
        "o__Solirubrobacterales",
        "f__Solirubrobacteraceae",
        "g__F1-60-MAGs163",
        "s__F1-60-MAGs163 sp025455895",
        "Bacteria",
        "Actinomycetota",
        "Thermoleophilia",
        "Solirubrobacterales",
        "Solirubrobacteraceae",
        "F1-60-MAGs163",
        "F1-60-MAGs163",
        "sp025455895"
    ],
    "_meo": [
        {
            "id": "MEO_0000151",
            "label": "wetland"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}