{ "type": "genome", "identifier": "GCA_025458485.1", "organism": "Paracoccaceae bacterium", "title": "Paracoccaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure", "publication": [ {} ], "properties": { "assembly_accession": "GCA_025458485.1", "bioproject": "PRJNA818364", "biosample": "SAMN27108663", "wgs_master": "JALOSJ000000000.1", "refseq_category": "na", "taxid": "1904441", "species_taxid": "1904441", "organism_name": "Paracoccaceae bacterium", "infraspecific_name": "", "isolate": "Prado204", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/28", "asm_name": "ASM2545848v1", "submitter": "NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/458/485/GCA_025458485.1_ASM2545848v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-28", "dateModified": "2022-09-28", "datePublished": "2022-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Paracoccaceae bacterium" ], "sample_taxid": [ "1904441" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Prado Wetlands, Corona, CA" ], "sample_host_location_id": [], "data_size": "1.055 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 64.58, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3894488", "Number of Sequences": "495", "Longest Sequences (bp)": "69991", "N50 (bp)": "10914", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.5", "Number of CDSs": "3384", "Average Protein Length": "297.3", "Coding Ratio (%)": "77.5", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Maribius salinus", "strain": "strain=DSM 26892", "accession": "GCA_900141995.1", "taxid": 313368, "species_taxid": 313368, "relation_to_type": "type", "validated": true, "ani": 77.8363, "matched_fragments": 302, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 77.8199, "matched_fragments": 331, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum marinum", "strain": "strain=DSM 18063", "accession": "GCA_004343075.1", "taxid": 320662, "species_taxid": 320662, "relation_to_type": "type", "validated": true, "ani": 77.7455, "matched_fragments": 343, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobacter thermarum", "strain": "strain=YIM 73036", "accession": "GCA_003574395.1", "taxid": 2670345, "species_taxid": 2670345, "relation_to_type": "type", "validated": true, "ani": 77.7192, "matched_fragments": 352, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limimaricola pyoseonensis", "strain": "strain=DSM 21424", "accession": "GCA_900102015.1", "taxid": 521013, "species_taxid": 521013, "relation_to_type": "type", "validated": true, "ani": 77.6924, "matched_fragments": 349, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 77.6538, "matched_fragments": 317, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum euryhalinum", "strain": "strain=DSM 4868", "accession": "GCA_004342445.1", "taxid": 35805, "species_taxid": 35805, "relation_to_type": "type", "validated": true, "ani": 77.6168, "matched_fragments": 350, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 77.5528, "matched_fragments": 343, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", "validated": true, "ani": 77.4797, "matched_fragments": 323, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 77.3997, "matched_fragments": 345, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus fontiphilus", "strain": "strain=MVW-1", "accession": "GCA_017356265.1", "taxid": 1815556, "species_taxid": 1815556, "relation_to_type": "type", "validated": true, "ani": 77.3971, "matched_fragments": 273, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus endophyticus", "strain": "strain=SYSUP0003", "accession": "GCA_003286075.1", "taxid": 2233774, "species_taxid": 2233774, "relation_to_type": "type", "validated": true, "ani": 77.3946, "matched_fragments": 307, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseivivax isoporae", "strain": "strain=LMG 25204", "accession": "GCA_000521865.1", "taxid": 591206, "species_taxid": 591206, "relation_to_type": "type", "validated": true, "ani": 77.3591, "matched_fragments": 351, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus mutanolyticus", "strain": "strain=RSP-02", "accession": "GCA_003285265.1", "taxid": 1499308, "species_taxid": 1499308, "relation_to_type": "type", "validated": true, "ani": 77.3063, "matched_fragments": 282, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus luteus", "strain": "strain=CFH 10530", "accession": "GCA_004522155.1", "taxid": 2508543, "species_taxid": 2508543, "relation_to_type": "type", "validated": true, "ani": 77.2738, "matched_fragments": 326, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sphaerophysae", "strain": "strain=HAMBI 3106", "accession": "GCA_000763805.1", "taxid": 690417, "species_taxid": 690417, "relation_to_type": "type", "validated": true, "ani": 77.2579, "matched_fragments": 286, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Loktanella fryxellensis", "strain": "strain=DSM 16213", "accession": "GCA_900110065.1", "taxid": 245187, "species_taxid": 245187, "relation_to_type": "type", "validated": true, "ani": 77.2542, "matched_fragments": 295, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 77.2454, "matched_fragments": 297, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silicimonas algicola", "strain": "strain=DSM 103371", "accession": "GCA_003148765.1", "taxid": 1826607, "species_taxid": 1826607, "relation_to_type": "type", "validated": true, "ani": 77.1482, "matched_fragments": 242, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum robiginosum", "strain": "strain=DSM 12329", "accession": "GCA_003944755.1", "taxid": 68292, "species_taxid": 68292, "relation_to_type": "type", "validated": true, "ani": 77.1463, "matched_fragments": 329, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 77.1416, "matched_fragments": 330, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus aerius", "strain": "strain=KCTC 42845", "accession": "GCA_016757275.1", "taxid": 1915382, "species_taxid": 1915382, "relation_to_type": "type", "validated": true, "ani": 77.1004, "matched_fragments": 255, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus binzhouensis", "strain": "strain=wg1", "accession": "GCA_016446475.1", "taxid": 2796149, "species_taxid": 2796149, "relation_to_type": "type", "validated": true, "ani": 77.0899, "matched_fragments": 323, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=CGMCC 1.12377", "accession": "GCA_014637265.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 77.0487, "matched_fragments": 299, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=JLT2016", "accession": "GCA_001969385.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 76.9811, "matched_fragments": 310, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter nectariphilus", "strain": "strain=DSM 15620", "accession": "GCA_000429765.1", "taxid": 220343, "species_taxid": 220343, "relation_to_type": "type", "validated": true, "ani": 76.9683, "matched_fragments": 302, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=22DY15", "accession": "GCA_002094875.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 76.9611, "matched_fragments": 210, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevirhabdus pacifica", "strain": "strain=DSM 27767", "accession": "GCA_002797755.1", "taxid": 1267768, "species_taxid": 1267768, "relation_to_type": "type", "validated": true, "ani": 76.9441, "matched_fragments": 240, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger thiooxidans", "strain": "strain=DSM 10146", "accession": "GCA_900102075.1", "taxid": 282683, "species_taxid": 282683, "relation_to_type": "type", "validated": true, "ani": 76.856, "matched_fragments": 302, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius nitratireducens", "strain": "strain=TFZ", "accession": "GCA_002925845.1", "taxid": 2044597, "species_taxid": 2044597, "relation_to_type": "type", "validated": true, "ani": 76.8557, "matched_fragments": 228, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tropicimonas isoalkanivorans", "strain": "strain=DSM 19548", "accession": "GCA_900112335.1", "taxid": 441112, "species_taxid": 441112, "relation_to_type": "type", "validated": true, "ani": 76.8258, "matched_fragments": 203, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 76.7431, "matched_fragments": 255, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 76.7271, "matched_fragments": 258, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_900112725.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 76.7144, "matched_fragments": 257, "total_fragments": 1061, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 64.58, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_002291955.1", "gtdb_species": "s__UBA996 sp002291955", "ani": 87.9302, "matched_fragments": 619, "total_fragments": 1061, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__UBA996", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003993775.1", "gtdb_species": "s__Frigidibacter sp003993775", "ani": 77.9698, "matched_fragments": 375, "total_fragments": 1061, "gtdb_taxonomy": 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