{
    "type": "genome",
    "identifier": "GCA_025463545.1",
    "organism": "Microbacteriaceae bacterium",
    "title": "Microbacteriaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Colorado State University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_025463545.1",
        "bioproject": "PRJNA682830",
        "biosample": "SAMN17837157",
        "wgs_master": "JAODAR000000000.1",
        "refseq_category": "na",
        "taxid": "1873462",
        "species_taxid": "1873462",
        "organism_name": "Microbacteriaceae bacterium",
        "infraspecific_name": "",
        "isolate": "RYN_69",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/09/28",
        "asm_name": "ASM2546354v1",
        "submitter": "Colorado State University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/463/545/GCA_025463545.1_ASM2546354v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-09-28",
    "dateModified": "2022-09-28",
    "datePublished": "2022-09-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Microbacteriaceae bacterium"
        ],
        "sample_taxid": [
            "1873462"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Wyoming"
        ],
        "sample_host_location_id": [],
        "data_size": "0.406 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 37.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1464184",
        "Number of Sequences": "15",
        "Longest Sequences (bp)": "267072",
        "N50 (bp)": "155935",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.3",
        "Number of CDSs": "1372",
        "Average Protein Length": "317.0",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "23",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Cryobacterium psychrotolerans",
                "strain": "strain=CGMCC 1.5382",
                "accession": "GCA_004564325.1",
                "taxid": 386301,
                "species_taxid": 386301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4713,
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                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cryobacterium arcticum",
                "strain": "strain=SK-1",
                "accession": "GCA_003185895.1",
                "taxid": 670052,
                "species_taxid": 670052,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3546,
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                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cryobacterium psychrotolerans",
                "strain": "strain=CGMCC 1.5382",
                "accession": "GCA_900101115.1",
                "taxid": 386301,
                "species_taxid": 386301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3415,
                "matched_fragments": 193,
                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cryobacterium soli",
                "strain": "strain=GCJ02",
                "accession": "GCA_003611035.1",
                "taxid": 2220095,
                "species_taxid": 2220095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1798,
                "matched_fragments": 195,
                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glaciibacter superstes",
                "strain": "strain=DSM 21135",
                "accession": "GCA_000421145.1",
                "taxid": 501023,
                "species_taxid": 501023,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3388,
                "matched_fragments": 216,
                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cryobacterium luteum",
                "strain": "strain=CGMCC 1.11210",
                "accession": "GCA_900110125.1",
                "taxid": 1424661,
                "species_taxid": 1424661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1694,
                "matched_fragments": 169,
                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cryobacterium ruanii",
                "strain": "strain=Sr36",
                "accession": "GCA_004404055.1",
                "taxid": 1259197,
                "species_taxid": 1259197,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0846,
                "matched_fragments": 153,
                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cryobacterium luteum",
                "strain": "strain=Hh15",
                "accession": "GCA_004402515.1",
                "taxid": 1424661,
                "species_taxid": 1424661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9834,
                "matched_fragments": 171,
                "total_fragments": 479,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 37.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_015752155.1",
                "gtdb_species": "s__Cryobacterium sp015752155",
                "ani": 80.3629,
                "matched_fragments": 204,
                "total_fragments": 479,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003185895.1",
                "gtdb_species": "s__Cryobacterium arcticum",
                "ani": 80.3546,
                "matched_fragments": 196,
                "total_fragments": 479,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004402595.1",
                "gtdb_species": "s__Cryobacterium sp004402595",
                "ani": 80.301,
                "matched_fragments": 180,
                "total_fragments": 479,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.58",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_002404115.1",
                "gtdb_species": "s__Cryobacterium sp002404115",
                "ani": 80.2555,
                "matched_fragments": 125,
                "total_fragments": 479,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004403945.1",
                "gtdb_species": "s__Cryobacterium sp004403945",
                "ani": 79.8184,
                "matched_fragments": 199,
                "total_fragments": 479,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004402485.1",
                "gtdb_species": "s__Cryobacterium sp004402485",
                "ani": 79.7978,
                "matched_fragments": 187,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004402235.1",
                "gtdb_species": "s__Cryobacterium sp004402235",
                "ani": 79.4356,
                "matched_fragments": 180,
                "total_fragments": 479,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium",
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                "mean_intra_species_ani": "99.29",
                "min_intra_species_ani": "99.21",
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                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 7,
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            },
            {
                "accession": "GCF_900110125.1",
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                "ani": 79.1148,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Cryobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
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                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.394,
        "cell_length": 0.01,
        "doubling_h": 0.667,
        "growth_tmp": 27.726,
        "optimum_tmp": 27.345,
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        "gc_content": 67.665,
        "coding_genes": 2863.624,
        "rRNA16S_genes": 1.882,
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        "gram_stain": 0.994,
        "sporulation": 0.037,
        "motility": 0.26,
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        "aerobic_respiration": 0.995,
        "mesophilic_range_tmp": 0.96,
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        "psychrophilic_range_tmp": 0.04,
        "bacillus_cell_shape": 0.96,
        "coccus_cell_shape": 0.007,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.015,
        "vibrio_cell_shape": 0.015,
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    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Microbacteriaceae",
        "g__Cryobacterium",
        "s__Cryobacterium sp025463545"
    ],
    "_genome_taxon": [
        "Microbacteriaceae",
        "bacterium",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Microbacteriaceae",
        "g__Cryobacterium",
        "s__Cryobacterium sp025463545",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Microbacteriaceae",
        "Cryobacterium",
        "Cryobacterium",
        "sp025463545"
    ],
    "_meo": [
        {
            "id": "MEO_0000007",
            "label": "soil"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}