{ "type": "genome", "identifier": "GCA_025463565.1", "organism": "Microbacteriaceae bacterium", "title": "Microbacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Colorado State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_025463565.1", "bioproject": "PRJNA682830", "biosample": "SAMN17837155", "wgs_master": "JAODAT000000000.1", "refseq_category": "na", "taxid": "1873462", "species_taxid": "1873462", "organism_name": "Microbacteriaceae bacterium", "infraspecific_name": "", "isolate": "RYN_67", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/09/28", "asm_name": "ASM2546356v1", "submitter": "Colorado State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/463/565/GCA_025463565.1_ASM2546356v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-09-28", "dateModified": "2022-09-28", "datePublished": "2022-09-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbacteriaceae bacterium" ], "sample_taxid": [ "1873462" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Wyoming" ], "sample_host_location_id": [], "data_size": "0.866 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 77.78, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3123487", "Number of Sequences": "162", "Longest Sequences (bp)": "115801", "N50 (bp)": "38255", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.2", "Number of CDSs": "2950", "Average Protein Length": "310.5", "Coding Ratio (%)": "88.0", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lacisediminihabitans profunda", "strain": "strain=CHu50b-6-2", "accession": "GCA_008040105.1", "taxid": 2594790, "species_taxid": 2594790, "relation_to_type": "type", "validated": true, "ani": 79.9739, "matched_fragments": 393, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lacisediminihabitans changchengi", "strain": "strain=G11-30", "accession": "GCA_016634425.1", "taxid": 2787634, "species_taxid": 2787634, "relation_to_type": "type", "validated": true, "ani": 79.9703, "matched_fragments": 372, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marisediminicola senii", "strain": "strain=SM7_A14", "accession": "GCA_011057645.1", "taxid": 2711233, "species_taxid": 2711233, "relation_to_type": "type", "validated": true, "ani": 78.903, "matched_fragments": 301, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conyzicola nivalis", "strain": "strain=CGMCC 1.12813", "accession": "GCA_014639655.1", "taxid": 1477021, "species_taxid": 1477021, "relation_to_type": "type", "validated": true, "ani": 78.8676, "matched_fragments": 343, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Galbitalea soli", "strain": "strain=DSM 105515", "accession": "GCA_013410525.1", "taxid": 1268042, "species_taxid": 1268042, "relation_to_type": "type", "validated": true, "ani": 78.7877, "matched_fragments": 313, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Galbitalea soli", "strain": "strain=NBRC 108727", "accession": "GCA_010686725.1", "taxid": 1268042, "species_taxid": 1268042, "relation_to_type": "type", "validated": true, "ani": 78.7533, "matched_fragments": 310, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marisediminicola antarctica", "strain": "strain=ZS314", "accession": "GCA_009930795.1", "taxid": 674079, "species_taxid": 674079, "relation_to_type": "type", "validated": true, "ani": 78.5477, "matched_fragments": 300, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux ginsengi", "strain": "strain=CGMCC 4.3491", "accession": "GCA_900107435.1", "taxid": 381665, "species_taxid": 381665, "relation_to_type": "type", "validated": true, "ani": 78.5332, "matched_fragments": 293, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_002240635.1", "taxid": 31965, 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77.9763, "matched_fragments": 316, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces bauzanensis", "strain": "strain=CGMCC 1.8984", "accession": "GCA_014645655.1", "taxid": 1308924, "species_taxid": 1308924, "relation_to_type": "type", "validated": true, "ani": 77.8691, "matched_fragments": 245, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces agglutinans", "strain": "strain=CFH 90414", "accession": "GCA_009647605.1", "taxid": 2662258, "species_taxid": 2662258, "relation_to_type": "type", "validated": true, "ani": 77.8541, "matched_fragments": 267, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cavernae", "strain": "strain=SYSU K20354", "accession": "GCA_021044935.1", "taxid": 2898659, "species_taxid": 2898659, "relation_to_type": "type", "validated": true, "ani": 77.8281, "matched_fragments": 284, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter tritici", "strain": "strain=DSM 7486", "accession": "GCA_002932875.1", "taxid": 33888, "species_taxid": 33888, "relation_to_type": "type", "validated": true, "ani": 77.7815, "matched_fragments": 215, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labedella gwakjiensis", "strain": "strain=KSW2-17", "accession": "GCA_003990035.1", "taxid": 390269, "species_taxid": 390269, "relation_to_type": "type", "validated": true, "ani": 77.5201, "matched_fragments": 209, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labedella gwakjiensis", "strain": "strain=DSM 21548", "accession": "GCA_003014675.1", "taxid": 390269, "species_taxid": 390269, "relation_to_type": "type", "validated": true, "ani": 77.5189, "matched_fragments": 202, "total_fragments": 951, "ani_threshold": 95, "status": "below_threshold" } ], 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