{
    "type": "genome",
    "identifier": "GCA_025656255.1",
    "organism": "Candidatus Thiodiazotropha sp. (ex Lucinoma aequizonata)",
    "title": "Candidatus Thiodiazotropha sp. (ex Lucinoma aequizonata)",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Vienna",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_025656255.1",
        "bioproject": "PRJNA744034",
        "biosample": "SAMN20119424",
        "wgs_master": "JAHXHY000000000.1",
        "refseq_category": "na",
        "taxid": "2857018",
        "species_taxid": "2857018",
        "organism_name": "Candidatus Thiodiazotropha sp. (ex Lucinoma aequizonata)",
        "infraspecific_name": "",
        "isolate": "HARV4_Th1",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/11",
        "asm_name": "ASM2565625v1",
        "submitter": "University of Vienna",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/656/255/GCA_025656255.1_ASM2565625v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-11",
    "dateModified": "2022-10-11",
    "datePublished": "2022-10-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Thiodiazotropha sp. (ex Lucinoma aequizonata)"
        ],
        "sample_taxid": [
            "2857018"
        ],
        "sample_host_organism": [
            "Lucinoma aequizonata"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: California"
        ],
        "sample_host_location_id": [],
        "data_size": "0.858 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3133292",
        "Number of Sequences": "1044",
        "Longest Sequences (bp)": "32328",
        "N50 (bp)": "3730",
        "Gap Ratio (%)": "0.009575",
        "GCcontent (%)": "48.4",
        "Number of CDSs": "3165",
        "Average Protein Length": "213.6",
        "Coding Ratio (%)": "64.7",
        "Number of rRNAs": "5",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003058525.1",
                "gtdb_species": "s__Thiodiazotropha sp003058525",
                "ani": 78.1463,
                "matched_fragments": 128,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.55",
                "min_intra_species_ani": "99.55",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003094535.1",
                "gtdb_species": "s__Thiodiazotropha sp003094535",
                "ani": 78.0532,
                "matched_fragments": 120,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.75",
                "min_intra_species_ani": "99.58",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCA_003094555.1",
                "gtdb_species": "s__Thiodiazotropha sp003094555",
                "ani": 77.8499,
                "matched_fragments": 140,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.69",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001715975.1",
                "gtdb_species": "s__Thiodiazotropha endolucinida_A",
                "ani": 77.7682,
                "matched_fragments": 137,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.81",
                "min_intra_species_ani": "98.44",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 30,
                "status": "-"
            },
            {
                "accession": "GCA_016842065.1",
                "gtdb_species": "s__Thiodiazotropha sp016842065",
                "ani": 77.6148,
                "matched_fragments": 93,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003058495.1",
                "gtdb_species": "s__Thiodiazotropha sp003058495",
                "ani": 77.543,
                "matched_fragments": 122,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.61",
                "min_intra_species_ani": "99.54",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_001708965.1",
                "gtdb_species": "s__Thiodiazotropha endoloripes",
                "ani": 77.5202,
                "matched_fragments": 97,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.43",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_003676145.1",
                "gtdb_species": "s__Thiodiazotropha endolucinida",
                "ani": 77.3628,
                "matched_fragments": 101,
                "total_fragments": 502,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "96.39",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 26,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Chromatiales",
        "f__Sedimenticolaceae",
        "g__Thiodiazotropha",
        "s__"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Thiodiazotropha",
        "sp.",
        "(ex",
        "Lucinoma",
        "aequizonata)",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Chromatiales",
        "f__Sedimenticolaceae",
        "g__Thiodiazotropha",
        "s__",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Chromatiales",
        "Sedimenticolaceae",
        "Thiodiazotropha",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000420",
            "label": "symbiotic microbe"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}