{ "type": "genome", "identifier": "GCA_025698885.1", "organism": "Nitrobacter sp.", "title": "Nitrobacter sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Shanghai Jiao Tong University (SJTU)", "publication": [ {} ], "properties": { "assembly_accession": "GCA_025698885.1", "bioproject": "PRJNA745378", "biosample": "SAMN20425661", "wgs_master": "JAILWP000000000.1", "refseq_category": "na", "taxid": "29420", "species_taxid": "29420", "organism_name": "Nitrobacter sp.", "infraspecific_name": "", "isolate": "ECS31B4", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/13", "asm_name": "ASM2569888v1", "submitter": "Shanghai Jiao Tong University (SJTU)", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/698/885/GCA_025698885.1_ASM2569888v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-13", "dateModified": "2022-10-13", "datePublished": "2022-10-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Nitrobacter sp." ], "sample_taxid": [ "29420" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: the East China Sea" ], "sample_host_location_id": [], "data_size": "1.036 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 16.67, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3664220", "Number of Sequences": "98", "Longest Sequences (bp)": "186387", "N50 (bp)": "87154", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.5", "Number of CDSs": "3379", "Average Protein Length": "293.4", "Coding Ratio (%)": "81.2", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nitrobacter winogradskyi", "strain": "strain=Nb-255", "accession": "GCA_000012725.1", "taxid": 913, "species_taxid": 913, "relation_to_type": "type", "validated": true, "ani": 87.5175, "matched_fragments": 879, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrobacter hamburgensis", "strain": "strain=X14", "accession": "GCA_000013885.1", "taxid": 912, "species_taxid": 912, "relation_to_type": "type", "validated": true, "ani": 84.6227, "matched_fragments": 825, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium sediminis", "strain": "strain=S2-20-1", "accession": "GCA_018736085.1", "taxid": 2840469, "species_taxid": 2840469, "relation_to_type": "type", "validated": true, "ani": 79.4137, "matched_fragments": 495, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium pachyrhizi", "strain": "strain=PAC 48", "accession": "GCA_001189245.1", "taxid": 280333, "species_taxid": 280333, "relation_to_type": "type", "validated": true, "ani": 79.3229, "matched_fragments": 478, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium acaciae", "strain": "strain=10BB", "accession": "GCA_020889785.1", "taxid": 2683706, "species_taxid": 2683706, "relation_to_type": "type", "validated": true, "ani": 79.2566, "matched_fragments": 457, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium quebecense", "strain": "strain=66S1MB, /ecotype=symbiovar septentrionalis", "accession": "GCA_013373795.3", "taxid": 2748629, "species_taxid": 2748629, "relation_to_type": "type", "validated": true, "ani": 79.1852, "matched_fragments": 488, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium jicamae", "strain": "strain=PAC68", "accession": "GCA_001440395.1", "taxid": 280332, "species_taxid": 280332, "relation_to_type": "type", "validated": true, "ani": 79.1838, "matched_fragments": 476, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium paxllaeri", "strain": "strain=LMTR 21", "accession": "GCA_001693515.2", "taxid": 190148, "species_taxid": 190148, "relation_to_type": "type", "validated": true, "ani": 79.1635, "matched_fragments": 488, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 79.1252, "matched_fragments": 454, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 79.0934, "matched_fragments": 498, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 79.0871, "matched_fragments": 461, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopseudomonas rhenobacensis", "strain": "strain=DSM 12706", "accession": "GCA_014203125.1", "taxid": 87461, "species_taxid": 87461, "relation_to_type": "type", "validated": true, "ani": 79.069, "matched_fragments": 455, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium altum", "strain": "strain=Pear77", "accession": "GCA_020889705.1", "taxid": 1571202, "species_taxid": 1571202, "relation_to_type": "type", "validated": true, "ani": 79.002, "matched_fragments": 469, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diazoefficiens", "strain": "strain=USDA 110", "accession": "GCA_001642675.1", "taxid": 1355477, "species_taxid": 1355477, "relation_to_type": "type", "validated": true, "ani": 78.9948, "matched_fragments": 479, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium macuxiense", "strain": "strain=BR 10303", "accession": "GCA_001542415.1", "taxid": 1755647, "species_taxid": 1755647, "relation_to_type": "type", "validated": true, "ani": 78.9572, "matched_fragments": 473, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nitroreducens", "strain": "strain=TSA1", "accession": "GCA_002776695.1", "taxid": 709803, "species_taxid": 709803, "relation_to_type": "type", "validated": true, "ani": 78.9494, "matched_fragments": 446, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopseudomonas pseudopalustris", "strain": "strain=DSM 123", "accession": "GCA_900110435.1", "taxid": 1513892, "species_taxid": 1513892, "relation_to_type": "type", "validated": true, "ani": 78.9029, "matched_fragments": 448, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cenepequi", "strain": "strain=CNPSo 4026", "accession": "GCA_020329485.1", "taxid": 2821403, "species_taxid": 2821403, "relation_to_type": "type", "validated": true, "ani": 78.8652, "matched_fragments": 463, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium archetypum", "strain": "strain=WSM 1744", "accession": "GCA_013114835.1", "taxid": 2721160, "species_taxid": 2721160, "relation_to_type": "type", "validated": true, "ani": 78.764, "matched_fragments": 479, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopseudomonas faecalis", "strain": "strain=JCM 11668", "accession": "GCA_003217325.1", "taxid": 99655, "species_taxid": 99655, "relation_to_type": "type", "validated": true, "ani": 78.5009, "matched_fragments": 378, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger profundus", "strain": "strain=JLT2016", "accession": "GCA_001969385.1", "taxid": 1229727, "species_taxid": 1229727, "relation_to_type": "type", "validated": true, "ani": 76.5158, "matched_fragments": 66, "total_fragments": 1176, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium hassiacum", "strain": 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