[2023-06-30 21:00:32,313] [INFO] DFAST_QC pipeline started.
[2023-06-30 21:00:32,315] [INFO] DFAST_QC version: 0.5.7
[2023-06-30 21:00:32,315] [INFO] DQC Reference Directory: /var/lib/cwl/stg7b4421aa-46cf-4125-ba0c-d913c3a38c15/dqc_reference
[2023-06-30 21:00:33,484] [INFO] ===== Start taxonomy check using ANI =====
[2023-06-30 21:00:33,485] [INFO] Task started: Prodigal
[2023-06-30 21:00:33,485] [INFO] Running command: gunzip -c /var/lib/cwl/stgb7089538-7fac-4b26-8041-770a9009bb6f/GCA_025929595.1_ASM2592959v1_genomic.fna.gz | prodigal -d GCA_025929595.1_ASM2592959v1_genomic.fna/cds.fna -a GCA_025929595.1_ASM2592959v1_genomic.fna/protein.faa -g 11 -q > /dev/null
[2023-06-30 21:00:40,284] [INFO] Task succeeded: Prodigal
[2023-06-30 21:00:40,284] [INFO] Task started: HMMsearch
[2023-06-30 21:00:40,285] [INFO] Running command: hmmsearch --tblout GCA_025929595.1_ASM2592959v1_genomic.fna/hmmer_result.tsv -E 1E-50 /var/lib/cwl/stg7b4421aa-46cf-4125-ba0c-d913c3a38c15/dqc_reference/reference_markers.hmm GCA_025929595.1_ASM2592959v1_genomic.fna/protein.faa > /dev/null
[2023-06-30 21:00:40,474] [INFO] Task succeeded: HMMsearch
[2023-06-30 21:00:40,475] [INFO] Found 6/6 markers.
[2023-06-30 21:00:40,503] [INFO] Query marker FASTA was written to GCA_025929595.1_ASM2592959v1_genomic.fna/markers.fasta
[2023-06-30 21:00:40,504] [INFO] Task started: Blastn
[2023-06-30 21:00:40,504] [INFO] Running command: blastn -query GCA_025929595.1_ASM2592959v1_genomic.fna/markers.fasta -db /var/lib/cwl/stg7b4421aa-46cf-4125-ba0c-d913c3a38c15/dqc_reference/reference_markers.fasta -out GCA_025929595.1_ASM2592959v1_genomic.fna/blast.markers.tsv -outfmt 6 -max_hsps 1 -num_alignments 5
[2023-06-30 21:00:41,258] [INFO] Task succeeded: Blastn
[2023-06-30 21:00:41,263] [INFO] Selected 39 target genomes.
[2023-06-30 21:00:41,263] [INFO] Target genome list was writen to GCA_025929595.1_ASM2592959v1_genomic.fna/target_genomes.txt
[2023-06-30 21:00:41,264] [INFO] Task started: fastANI
[2023-06-30 21:00:41,264] [INFO] Running command: fastANI --query /var/lib/cwl/stgb7089538-7fac-4b26-8041-770a9009bb6f/GCA_025929595.1_ASM2592959v1_genomic.fna.gz --refList GCA_025929595.1_ASM2592959v1_genomic.fna/target_genomes.txt --output GCA_025929595.1_ASM2592959v1_genomic.fna/fastani_result.tsv --threads 1
[2023-06-30 21:01:15,243] [INFO] Task succeeded: fastANI
[2023-06-30 21:01:15,243] [INFO] Loading species specific ANI threshold from /var/lib/cwl/stg7b4421aa-46cf-4125-ba0c-d913c3a38c15/dqc_reference/prokaryote_ANI_species_specific_threshold.txt
[2023-06-30 21:01:15,244] [WARNING] Species-specific ANI threshold file not found. Will use the default threshold for all species. [/var/lib/cwl/stg7b4421aa-46cf-4125-ba0c-d913c3a38c15/dqc_reference/prokaryote_ANI_species_specific_threshold.txt]
[2023-06-30 21:01:15,270] [INFO] Found 39 fastANI hits (0 hits with ANI > threshold)
[2023-06-30 21:01:15,270] [INFO] The taxonomy check result is classified as 'below_threshold'.
[2023-06-30 21:01:15,271] [INFO] DFAST Taxonomy check final result
--------------------------------------------------------------------------------
organism_name	strain	accession	taxid	species_taxid	relation_to_type	validated	ani	matched_fragments	total_fragments	ani_threshold	status
Blastochloris tepida	strain=GI	GCA_003966715.1	2233851	2233851	type	True	77.1288	161	717	95	below_threshold
Bradyrhizobium altum	strain=Pear77	GCA_020889705.1	1571202	1571202	type	True	77.1243	216	717	95	below_threshold
Bradyrhizobium cajani	strain=1010	GCA_009759665.1	1928661	1928661	type	True	77.0737	224	717	95	below_threshold
Bradyrhizobium acaciae	strain=10BB	GCA_020889785.1	2683706	2683706	type	True	77.0466	207	717	95	below_threshold
Bradyrhizobium tropiciagri	strain=SEMIA 6148	GCA_001189845.1	312253	312253	type	True	77.0196	209	717	95	below_threshold
Bradyrhizobium ottawaense	strain=OO99	GCA_002278135.2	931866	931866	type	True	77.0192	217	717	95	below_threshold
Chelatococcus caeni	strain=DSM 103737	GCA_014196925.1	1348468	1348468	type	True	77.0081	206	717	95	below_threshold
Bradyrhizobium aeschynomenes	strain=83002	GCA_013178945.1	2734909	2734909	type	True	76.9677	210	717	95	below_threshold
Ancylobacter rudongensis	strain=CGMCC 1.1761	GCA_900100155.1	177413	177413	type	True	76.9593	159	717	95	below_threshold
Blastochloris sulfoviridis	strain=DSM 729	GCA_008630065.1	50712	50712	type	True	76.958	165	717	95	below_threshold
Starkeya koreensis	strain=Jip08	GCA_023016525.1	266121	266121	type	True	76.9378	205	717	95	below_threshold
Bradyrhizobium elkanii	strain=USDA 76	GCA_023278185.1	29448	29448	type	True	76.9366	222	717	95	below_threshold
Bradyrhizobium sediminis	strain=S2-20-1	GCA_018736085.1	2840469	2840469	type	True	76.9334	201	717	95	below_threshold
Bradyrhizobium shewense	strain=ERR11	GCA_900094605.1	1761772	1761772	type	True	76.9194	220	717	95	below_threshold
Ancylobacter dichloromethanicus	strain=VKM B-2484	GCA_018390645.1	518825	518825	type	True	76.9152	175	717	95	below_threshold
Bradyrhizobium oropedii	strain=Pear76	GCA_020889685.1	1571201	1571201	type	True	76.8888	203	717	95	below_threshold
Rhodoplanes elegans	strain=DSM 11907	GCA_016653355.1	29408	29408	type	True	76.8681	223	717	95	below_threshold
Rhodoplanes elegans	strain=DSM 11907	GCA_003258805.1	29408	29408	type	True	76.8508	197	717	95	below_threshold
Bradyrhizobium viridifuturi	strain=SEMIA 690	GCA_001238275.1	1654716	1654716	type	True	76.8413	225	717	95	below_threshold
Blastochloris viridis	strain=DSM 133	GCA_001548155.2	1079	1079	type	True	76.8394	164	717	95	below_threshold
Blastochloris viridis	strain=ATCC 19567	GCA_001402875.1	1079	1079	type	True	76.8249	163	717	95	below_threshold
Variibacter gotjawalensis	strain=CECT 8514	GCA_011761465.1	1333996	1333996	type	True	76.8187	164	717	95	below_threshold
Variibacter gotjawalensis	strain=GJW-30	GCA_002355335.1	1333996	1333996	type	True	76.8098	162	717	95	below_threshold
Variibacter gotjawalensis	strain=DSM 29671	GCA_004216635.1	1333996	1333996	type	True	76.8092	162	717	95	below_threshold
Ancylobacter sonchi	strain=VKM B-3145	GCA_018390695.1	1937790	1937790	type	True	76.7877	180	717	95	below_threshold
Kaistia hirudinis	strain=DSM 25966	GCA_014196455.1	1293440	1293440	type	True	76.7423	149	717	95	below_threshold
Phreatobacter cathodiphilus	strain=S-12	GCA_003008515.1	1868589	1868589	type	True	76.6983	168	717	95	below_threshold
Bradyrhizobium cenepequi	strain=CNPSo 4026	GCA_020329485.1	2821403	2821403	type	True	76.6682	196	717	95	below_threshold
Enterovirga rhinocerotis	strain=DSM 25903	GCA_004363955.1	1339210	1339210	type	True	76.6543	150	717	95	below_threshold
Microvirga lotononidis	strain=WSM3557	GCA_000262405.1	864069	864069	type	True	76.6146	120	717	95	below_threshold
Rhodoplanes roseus	strain=DSM 5909	GCA_003258865.1	29409	29409	type	True	76.6086	201	717	95	below_threshold
Phreatobacter oligotrophus	strain=DSM 25521	GCA_003046185.1	1122261	1122261	type	True	76.5147	166	717	95	below_threshold
Methyloferula stellata	strain=AR4T	GCA_000385335.1	876270	876270	type	True	76.4677	79	717	95	below_threshold
Mesorhizobium camelthorni	strain=CCNWXJ 40-4	GCA_011045125.1	475069	475069	type	True	76.4657	129	717	95	below_threshold
Afifella pfennigii	strain=DSM 17143	GCA_000688515.1	209897	209897	type	True	76.4559	112	717	95	below_threshold
Methylobacterium symbioticum	strain=SB0023/3	GCA_902141845.1	2584084	2584084	type	True	76.401	156	717	95	below_threshold
Methylobacterium currus	strain=PR1016A	GCA_003058325.1	2051553	2051553	type	True	76.3724	164	717	95	below_threshold
Kaustia mangrovi	strain=R1DC25	GCA_015482775.1	2593653	2593653	type	True	76.2354	122	717	95	below_threshold
Aureimonas populi	strain=KCTC 42087	GCA_017815515.1	1701758	1701758	type	True	76.1245	104	717	95	below_threshold
--------------------------------------------------------------------------------
[2023-06-30 21:01:15,273] [INFO] DFAST Taxonomy check result was written to GCA_025929595.1_ASM2592959v1_genomic.fna/tc_result.tsv
[2023-06-30 21:01:15,280] [INFO] ===== Taxonomy check completed =====
[2023-06-30 21:01:15,280] [INFO] ===== Start completeness check using CheckM =====
[2023-06-30 21:01:15,281] [INFO] Setting CHECKM_DATA_PATH to /var/lib/cwl/stg7b4421aa-46cf-4125-ba0c-d913c3a38c15/dqc_reference/checkm_data
[2023-06-30 21:01:15,282] [INFO] Selected 'Prokaryote' markers (life, taxid=0) for CheckM
[2023-06-30 21:01:15,312] [INFO] Task started: CheckM
[2023-06-30 21:01:15,312] [INFO] Running command: checkm taxonomy_wf --tab_table -f GCA_025929595.1_ASM2592959v1_genomic.fna/cc_result.tsv -t 1 life "Prokaryote" GCA_025929595.1_ASM2592959v1_genomic.fna/checkm_input GCA_025929595.1_ASM2592959v1_genomic.fna/checkm_result
[2023-06-30 21:01:40,255] [INFO] Task succeeded: CheckM
[2023-06-30 21:01:40,256] [INFO] Completeness check finished.
--------------------------------------------------------------------------------
Completeness: 72.28%
Contamintation: 13.83%
Strain heterogeneity: 13.33%
--------------------------------------------------------------------------------
[2023-06-30 21:01:40,285] [INFO] ===== Completeness check finished =====
[2023-06-30 21:01:40,285] [INFO] ===== Start GTDB Search =====
[2023-06-30 21:01:40,285] [INFO] Query marker FASTA already exists. Will reuse it. (GCA_025929595.1_ASM2592959v1_genomic.fna/markers.fasta)
[2023-06-30 21:01:40,286] [INFO] Task started: Blastn
[2023-06-30 21:01:40,286] [INFO] Running command: blastn -query GCA_025929595.1_ASM2592959v1_genomic.fna/markers.fasta -db /var/lib/cwl/stg7b4421aa-46cf-4125-ba0c-d913c3a38c15/dqc_reference/reference_markers_gtdb.fasta -out GCA_025929595.1_ASM2592959v1_genomic.fna/blast.markers.gtdb.tsv -outfmt 6 -max_hsps 1 -num_alignments 5
[2023-06-30 21:01:41,518] [INFO] Task succeeded: Blastn
[2023-06-30 21:01:41,523] [INFO] Selected 44 target genomes.
[2023-06-30 21:01:41,523] [INFO] Target genome list was writen to GCA_025929595.1_ASM2592959v1_genomic.fna/target_genomes_gtdb.txt
[2023-06-30 21:01:41,586] [INFO] Task started: fastANI
[2023-06-30 21:01:41,586] [INFO] Running command: fastANI --query /var/lib/cwl/stgb7089538-7fac-4b26-8041-770a9009bb6f/GCA_025929595.1_ASM2592959v1_genomic.fna.gz --refList GCA_025929595.1_ASM2592959v1_genomic.fna/target_genomes_gtdb.txt --output GCA_025929595.1_ASM2592959v1_genomic.fna/fastani_result_gtdb.tsv --threads 1
[2023-06-30 21:02:14,180] [INFO] Task succeeded: fastANI
[2023-06-30 21:02:14,211] [INFO] Found 44 fastANI hits (0 hits with ANI > circumscription radius)
[2023-06-30 21:02:14,212] [INFO] GTDB search result
--------------------------------------------------------------------------------
accession	gtdb_species	ani	matched_fragments	total_fragments	gtdb_taxonomy	ani_circumscription_radius	mean_intra_species_ani	min_intra_species_ani	mean_intra_species_af	min_intra_species_af	num_clustered_genomes	status
GCA_003105195.1	s__FEB-22 sp003105195	77.8434	216	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__FEB-22	95.0	N/A	N/A	N/A	N/A	1	-
GCA_003135415.1	s__Palsa-892 sp003135415	77.7389	231	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Palsa-892	95.0	96.11	96.04	0.87	0.83	3	-
GCA_018335895.1	s__Ga0077548 sp018335895	77.518	244	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ga0077548	95.0	N/A	N/A	N/A	N/A	1	-
GCA_019187085.1	s__Pseudorhodoplanes sp019187085	77.5112	239	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudorhodoplanes	95.0	98.90	98.90	0.85	0.85	2	-
GCA_005884685.1	s__PALSA-894 sp005884685	77.4947	248	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__PALSA-894	95.0	N/A	N/A	N/A	N/A	1	-
GCF_000702305.1	s__GCF-000702305 sp000702305	77.4669	196	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__GCF-000702305	95.0	N/A	N/A	N/A	N/A	1	-
GCA_018240595.1	s__Pseudolabrys sp018240595	77.4166	244	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys	95.0	N/A	N/A	N/A	N/A	1	-
GCA_009694215.1	s__Z2-YC6860 sp009694215	77.3621	176	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Z2-YC6860	95.0	N/A	N/A	N/A	N/A	1	-
GCF_007559435.1	s__Starkeya sp007559435	77.3227	171	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Starkeya	95.0	98.55	98.55	0.95	0.95	2	-
GCA_001897755.1	s__Afipia sp001897755	77.3093	163	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Afipia	95.0	99.98	99.98	0.98	0.98	2	-
GCF_005153485.1	s__Pseudolabrys sp005153485	77.2932	218	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys	95.0	N/A	N/A	N/A	N/A	1	-
GCF_009223885.1	s__Ancylobacter sp009223885	77.2148	174	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ancylobacter	95.0	N/A	N/A	N/A	N/A	1	-
GCA_003140315.1	s__PALSA-894 sp003140315	77.2015	213	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__PALSA-894	95.0	N/A	N/A	N/A	N/A	1	-
GCA_016185205.1	s__Pseudolabrys sp016185205	77.1829	217	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys	95.0	N/A	N/A	N/A	N/A	1	-
GCF_003966715.1	s__Blastochloris tepida	77.1632	159	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Blastochloris	95.0	N/A	N/A	N/A	N/A	1	-
GCF_009759665.1	s__Bradyrhizobium cajani	77.0737	224	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium	95.0	95.56	95.54	0.80	0.80	3	-
GCF_900114915.1	s__Bradyrhizobium sp900114915	77.0708	211	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium	95.0	97.76	97.31	0.89	0.88	8	-
GCF_014196925.1	s__Chelatococcus_A caeni	77.0315	204	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Chelatococcus_A	95.0	98.75	98.72	0.96	0.95	3	-
GCA_017305535.1	s__62-47 sp017305535	76.9904	160	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__62-47	95.0	N/A	N/A	N/A	N/A	1	-
GCF_001641335.1	s__Bradyrhizobium stylosanthis	76.9741	232	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium	95.0	97.54	96.50	0.90	0.85	3	-
GCF_008630065.1	s__Blastochloris sulfoviridis	76.958	165	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Blastochloris	95.0	N/A	N/A	N/A	N/A	1	-
GCF_900100155.1	s__Ancylobacter rudongensis	76.9433	160	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ancylobacter	95.0	96.36	96.36	0.88	0.88	2	-
GCF_018390645.1	s__Ancylobacter dichloromethanicus	76.9293	174	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ancylobacter	95.0	N/A	N/A	N/A	N/A	1	-
GCF_018736105.1	s__Bradyrhizobium sp018736105	76.9032	187	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium	95.0	95.26	95.12	0.88	0.88	3	-
GCF_000282615.1	s__Bradyrhizobium sp000282615	76.8774	217	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium	95.0	N/A	N/A	N/A	N/A	1	-
GCF_000379145.1	s__Bradyrhizobium elkanii	76.871	229	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium	95.0	97.89	95.57	0.89	0.83	18	-
GCF_001908235.1	s__Bradyrhizobium sp001908235	76.8592	214	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium	95.0	N/A	N/A	N/A	N/A	1	-
GCF_001402875.1	s__Blastochloris viridis	76.839	162	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Blastochloris	95.0	100.00	100.00	1.00	1.00	3	-
GCF_000239795.1	s__Bradyrhizobium sp000239795	76.8099	193	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium	95.0	N/A	N/A	N/A	N/A	1	-
GCF_002355335.1	s__Variibacter gotjawalensis	76.8098	162	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Variibacter	95.0	100.00	100.00	1.00	1.00	3	-
GCF_018390695.1	s__Ancylobacter_B sonchi	76.7874	180	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ancylobacter_B	95.0	N/A	N/A	N/A	N/A	1	-
GCA_003152455.1	s__Pseudolabrys sp003152455	76.7818	196	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Pseudolabrys	95.0	N/A	N/A	N/A	N/A	1	-
GCF_900176205.1	s__Bradyrhizobium sp900176205	76.7799	220	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium	95.0	100.00	100.00	1.00	1.00	2	-
GCF_001295925.1	s__Bosea sp001295925	76.7717	151	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Bosea	95.0	N/A	N/A	N/A	N/A	1	-
GCF_003226555.1	s__Rhodopseudomonas palustris_I	76.7327	198	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Rhodopseudomonas	95.0	N/A	N/A	N/A	N/A	1	-
GCA_003241485.1	s__Angulomicrobium novellum_A	76.6882	173	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Angulomicrobium	95.0	N/A	N/A	N/A	N/A	1	-
GCF_000516555.1	s__P52-10 sp000516555	76.6805	169	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__P52-10	95.0	N/A	N/A	N/A	N/A	1	-
GCA_001464235.1	s__Phreatobacter sp001464235	76.6035	147	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter	95.0	N/A	N/A	N/A	N/A	1	-
GCA_017305635.1	s__Bauldia sp017305635	76.5565	159	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Bauldia	95.0	N/A	N/A	N/A	N/A	1	-
GCF_009600605.1	s__Pseudoxanthobacter spirostomi	76.505	149	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Pseudoxanthobacteraceae;g__Pseudoxanthobacter	95.0	N/A	N/A	N/A	N/A	1	-
GCA_003347645.1	s__Ga0077545 sp003347645	76.4623	130	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Methylopilaceae;g__Ga0077545	95.0	N/A	N/A	N/A	N/A	1	-
GCA_016210825.1	s__JACQTM01 sp016210825	76.3197	108	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__JACQTM01	95.0	N/A	N/A	N/A	N/A	1	-
GCA_903932535.1	s__Roseiarcus sp903932535	76.282	128	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Roseiarcus	95.0	N/A	N/A	N/A	N/A	1	-
GCA_019242655.1	s__JAFASC01 sp019242655	76.1006	93	717	d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__JAFASC01	95.0	N/A	N/A	N/A	N/A	1	-
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[2023-06-30 21:02:14,214] [INFO] GTDB search result was written to GCA_025929595.1_ASM2592959v1_genomic.fna/result_gtdb.tsv
[2023-06-30 21:02:14,214] [INFO] ===== GTDB Search completed =====
[2023-06-30 21:02:14,220] [INFO] DFAST_QC result json was written to GCA_025929595.1_ASM2592959v1_genomic.fna/dqc_result.json
[2023-06-30 21:02:14,221] [INFO] DFAST_QC completed!
[2023-06-30 21:02:14,221] [INFO] Total running time: 0h1m42s