{ "type": "genome", "identifier": "GCA_025929595.1", "organism": "Xanthobacteraceae bacterium", "title": "Xanthobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "CAU", "publication": [ {} ], "properties": { "assembly_accession": "GCA_025929595.1", "bioproject": "PRJNA744024", "biosample": "SAMN20133289", "wgs_master": "JAICQA000000000.1", "refseq_category": "na", "taxid": "2021379", "species_taxid": "2021379", "organism_name": "Xanthobacteraceae bacterium", "infraspecific_name": "", "isolate": "TY_HY_2_bin.11", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/31", "asm_name": "ASM2592959v1", "submitter": "CAU", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/025/929/595/GCA_025929595.1_ASM2592959v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-31", "dateModified": "2022-10-31", "datePublished": "2022-10-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Xanthobacteraceae bacterium" ], "sample_taxid": [ "2021379" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Taiyuan" ], "sample_host_location_id": [], "data_size": "0.823 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 72.28, "contamination": 13.83, "strain_heterogeneity": 13.33, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2923075", "Number of Sequences": "482", "Longest Sequences (bp)": "38228", "N50 (bp)": "8184", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.5", "Number of CDSs": "2472", "Average Protein Length": "286.8", "Coding Ratio (%)": "72.8", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 77.1288, "matched_fragments": 161, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium altum", "strain": "strain=Pear77", "accession": "GCA_020889705.1", "taxid": 1571202, "species_taxid": 1571202, "relation_to_type": "type", "validated": true, "ani": 77.1243, "matched_fragments": 216, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 77.0737, "matched_fragments": 224, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium acaciae", "strain": "strain=10BB", "accession": "GCA_020889785.1", "taxid": 2683706, "species_taxid": 2683706, "relation_to_type": "type", "validated": true, "ani": 77.0466, "matched_fragments": 207, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium tropiciagri", "strain": "strain=SEMIA 6148", "accession": "GCA_001189845.1", "taxid": 312253, "species_taxid": 312253, "relation_to_type": "type", "validated": true, "ani": 77.0196, "matched_fragments": 209, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium ottawaense", "strain": "strain=OO99", "accession": "GCA_002278135.2", "taxid": 931866, "species_taxid": 931866, "relation_to_type": "type", "validated": true, "ani": 77.0192, "matched_fragments": 217, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 77.0081, "matched_fragments": 206, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, "species_taxid": 2734909, "relation_to_type": "type", "validated": true, "ani": 76.9677, "matched_fragments": 210, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter rudongensis", "strain": "strain=CGMCC 1.1761", "accession": "GCA_900100155.1", "taxid": 177413, "species_taxid": 177413, "relation_to_type": "type", "validated": true, "ani": 76.9593, "matched_fragments": 159, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 76.958, "matched_fragments": 165, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya koreensis", "strain": "strain=Jip08", "accession": "GCA_023016525.1", "taxid": 266121, "species_taxid": 266121, "relation_to_type": "type", "validated": true, "ani": 76.9378, "matched_fragments": 205, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_023278185.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 76.9366, "matched_fragments": 222, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium sediminis", "strain": "strain=S2-20-1", "accession": "GCA_018736085.1", "taxid": 2840469, "species_taxid": 2840469, "relation_to_type": "type", "validated": true, "ani": 76.9334, "matched_fragments": 201, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium shewense", "strain": "strain=ERR11", "accession": "GCA_900094605.1", "taxid": 1761772, "species_taxid": 1761772, "relation_to_type": "type", "validated": true, "ani": 76.9194, "matched_fragments": 220, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter dichloromethanicus", "strain": "strain=VKM B-2484", "accession": "GCA_018390645.1", "taxid": 518825, "species_taxid": 518825, "relation_to_type": "type", "validated": true, "ani": 76.9152, "matched_fragments": 175, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 76.8888, "matched_fragments": 203, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes elegans", "strain": "strain=DSM 11907", "accession": "GCA_016653355.1", "taxid": 29408, "species_taxid": 29408, "relation_to_type": "type", "validated": true, "ani": 76.8681, "matched_fragments": 223, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes elegans", "strain": "strain=DSM 11907", "accession": "GCA_003258805.1", "taxid": 29408, "species_taxid": 29408, "relation_to_type": "type", "validated": true, "ani": 76.8508, "matched_fragments": 197, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 76.8413, "matched_fragments": 225, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris viridis", "strain": "strain=DSM 133", "accession": "GCA_001548155.2", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 76.8394, "matched_fragments": 164, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris viridis", "strain": "strain=ATCC 19567", "accession": "GCA_001402875.1", "taxid": 1079, "species_taxid": 1079, "relation_to_type": "type", "validated": true, "ani": 76.8249, "matched_fragments": 163, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variibacter gotjawalensis", "strain": "strain=CECT 8514", "accession": "GCA_011761465.1", "taxid": 1333996, "species_taxid": 1333996, "relation_to_type": "type", "validated": true, "ani": 76.8187, "matched_fragments": 164, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variibacter gotjawalensis", "strain": "strain=GJW-30", "accession": "GCA_002355335.1", "taxid": 1333996, "species_taxid": 1333996, "relation_to_type": "type", "validated": true, "ani": 76.8098, "matched_fragments": 162, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variibacter gotjawalensis", "strain": "strain=DSM 29671", "accession": "GCA_004216635.1", "taxid": 1333996, "species_taxid": 1333996, "relation_to_type": "type", "validated": true, "ani": 76.8092, "matched_fragments": 162, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter sonchi", "strain": "strain=VKM B-3145", "accession": "GCA_018390695.1", "taxid": 1937790, "species_taxid": 1937790, 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76.6682, "matched_fragments": 196, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovirga rhinocerotis", "strain": "strain=DSM 25903", "accession": "GCA_004363955.1", "taxid": 1339210, "species_taxid": 1339210, "relation_to_type": "type", "validated": true, "ani": 76.6543, "matched_fragments": 150, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lotononidis", "strain": "strain=WSM3557", "accession": "GCA_000262405.1", "taxid": 864069, "species_taxid": 864069, "relation_to_type": "type", "validated": true, "ani": 76.6146, "matched_fragments": 120, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 76.6086, "matched_fragments": 201, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter oligotrophus", "strain": "strain=DSM 25521", "accession": "GCA_003046185.1", "taxid": 1122261, "species_taxid": 1122261, "relation_to_type": "type", "validated": true, "ani": 76.5147, "matched_fragments": 166, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methyloferula stellata", "strain": "strain=AR4T", "accession": "GCA_000385335.1", "taxid": 876270, "species_taxid": 876270, "relation_to_type": "type", "validated": true, "ani": 76.4677, "matched_fragments": 79, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium camelthorni", "strain": "strain=CCNWXJ 40-4", "accession": "GCA_011045125.1", "taxid": 475069, "species_taxid": 475069, "relation_to_type": "type", "validated": true, "ani": 76.4657, "matched_fragments": 129, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Afifella pfennigii", "strain": "strain=DSM 17143", "accession": "GCA_000688515.1", "taxid": 209897, "species_taxid": 209897, "relation_to_type": "type", "validated": true, "ani": 76.4559, "matched_fragments": 112, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium symbioticum", "strain": "strain=SB0023/3", "accession": "GCA_902141845.1", "taxid": 2584084, "species_taxid": 2584084, "relation_to_type": "type", "validated": true, "ani": 76.401, "matched_fragments": 156, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium currus", "strain": "strain=PR1016A", "accession": "GCA_003058325.1", "taxid": 2051553, "species_taxid": 2051553, "relation_to_type": "type", "validated": true, "ani": 76.3724, "matched_fragments": 164, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaustia mangrovi", "strain": "strain=R1DC25", "accession": "GCA_015482775.1", "taxid": 2593653, "species_taxid": 2593653, "relation_to_type": "type", "validated": true, "ani": 76.2354, "matched_fragments": 122, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas populi", "strain": "strain=KCTC 42087", "accession": "GCA_017815515.1", "taxid": 1701758, "species_taxid": 1701758, "relation_to_type": "type", "validated": true, "ani": 76.1245, "matched_fragments": 104, "total_fragments": 717, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 72.28, "contamination": 13.83, "strain_heterogeneity": 13.33 }, "gtdb_result": [ { "accession": "GCA_003105195.1", "gtdb_species": "s__FEB-22 sp003105195", "ani": 77.8434, "matched_fragments": 216, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__FEB-22", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003135415.1", "gtdb_species": "s__Palsa-892 sp003135415", "ani": 77.7389, "matched_fragments": 231, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Palsa-892", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.11", "min_intra_species_ani": "96.04", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_018335895.1", "gtdb_species": "s__Ga0077548 sp018335895", "ani": 77.518, "matched_fragments": 244, "total_fragments": 717, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ga0077548", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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