{ "type": "genome", "identifier": "GCA_026002855.1", "organism": "Bryobacteraceae bacterium", "title": "Bryobacteraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "RIKEN-BRC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026002855.1", "bioproject": "PRJDB11609", "biosample": "SAMD00319328", "wgs_master": "BPGD00000000.1", "refseq_category": "na", "taxid": "2212468", "species_taxid": "2212468", "organism_name": "Bryobacteraceae bacterium", "infraspecific_name": "", "isolate": "KatS3mg004", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/11", "asm_name": "ASM2600285v1", "submitter": "RIKEN-BRC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/002/855/GCA_026002855.1_ASM2600285v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-11", "dateModified": "2022-10-11", "datePublished": "2022-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Bryobacteraceae bacterium" ], "sample_taxid": [ "2212468" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Shizuoka, Higashi-izu, Arayu" ], "sample_host_location_id": [], "data_size": "1.220 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4437915", "Number of Sequences": "1", "Longest Sequences (bp)": "4437915", "N50 (bp)": "4437915", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.1", "Number of CDSs": "3896", "Average Protein Length": "347.1", "Coding Ratio (%)": "91.4", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paludibaculum fermentans", "strain": "strain=P105", "accession": "GCA_015277775.1", "taxid": 1473598, "species_taxid": 1473598, "relation_to_type": "type", "validated": true, "ani": 76.6609, "matched_fragments": 312, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=DHOF10", "accession": "GCA_004123295.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 76.187, "matched_fragments": 65, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracidobacterium acidisoli", "strain": "strain=4G-K13", "accession": "GCA_003428625.2", "taxid": 2303751, "species_taxid": 2303751, "relation_to_type": "type", "validated": true, "ani": 76.1503, "matched_fragments": 82, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium dinghuense", "strain": "strain=CGMCC 1.13007", "accession": "GCA_014640355.1", "taxid": 1560006, "species_taxid": 1560006, "relation_to_type": "type", "validated": true, "ani": 76.1005, "matched_fragments": 64, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidobacterium capsulatum", "strain": "strain=ATCC 51196", "accession": "GCA_000022565.1", "taxid": 33075, "species_taxid": 33075, "relation_to_type": "type", "validated": true, "ani": 76.0644, "matched_fragments": 66, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bryobacter aggregatus", "strain": "strain=MPL3", "accession": "GCA_000702445.1", "taxid": 360054, "species_taxid": 360054, "relation_to_type": "type", "validated": true, "ani": 76.0526, "matched_fragments": 61, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Silvibacterium bohemicum", "strain": "strain=DSM 103733", "accession": "GCA_014201455.1", "taxid": 1577686, "species_taxid": 1577686, "relation_to_type": "type", "validated": true, "ani": 76.0495, "matched_fragments": 57, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 75.4752, "matched_fragments": 91, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 75.3317, "matched_fragments": 88, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter cryptus", "strain": "strain=DSM 12079", "accession": "GCA_000422985.1", "taxid": 196588, "species_taxid": 196588, "relation_to_type": "type", "validated": true, "ani": 75.2605, "matched_fragments": 51, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, "species_taxid": 2734909, "relation_to_type": "type", "validated": true, "ani": 75.1537, "matched_fragments": 88, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudokineococcus lusitanus", "strain": "strain=CECT 7306", "accession": "GCA_003751265.1", "taxid": 763993, "species_taxid": 763993, "relation_to_type": "type", "validated": true, "ani": 75.1194, "matched_fragments": 87, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus exercitus", "strain": "strain=AB043A", "accession": "GCA_003611585.1", "taxid": 2316736, "species_taxid": 2316736, "relation_to_type": "type", "validated": true, "ani": 75.0066, "matched_fragments": 144, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora deserti", "strain": "strain=13K206", "accession": "GCA_003236335.1", "taxid": 2070366, "species_taxid": 2070366, "relation_to_type": "type", "validated": true, "ani": 74.9197, "matched_fragments": 111, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas hellenica", "strain": "strain=LMG 31523", "accession": "GCA_018129085.1", "taxid": 2687306, "species_taxid": 2687306, "relation_to_type": "type", "validated": true, "ani": 74.8726, "matched_fragments": 124, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinacidiphila rubida", "strain": "strain=CGMCC 4.2026", "accession": "GCA_900110255.1", "taxid": 310780, "species_taxid": 310780, "relation_to_type": "type", "validated": true, "ani": 74.7408, "matched_fragments": 150, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacterium album", "strain": "strain=DSM 18261", "accession": "GCA_000426445.1", "taxid": 417948, "species_taxid": 417948, "relation_to_type": "type", "validated": true, "ani": 74.6528, "matched_fragments": 51, "total_fragments": 1479, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_016213725.1", "gtdb_species": "s__Paludibaculum sp016213725", "ani": 77.2129, "matched_fragments": 337, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__Paludibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016215215.1", "gtdb_species": "s__Paludibaculum sp016215215", "ani": 77.2016, "matched_fragments": 290, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__Paludibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016213245.1", "gtdb_species": "s__Paludibaculum usitatus_A", "ani": 77.1892, "matched_fragments": 331, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__Paludibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002298225.1", "gtdb_species": "s__Paludibaculum sp002298225", "ani": 76.9212, "matched_fragments": 374, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__Paludibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016721425.1", "gtdb_species": "s__Paludibaculum sp016721425", "ani": 76.8326, "matched_fragments": 331, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__Paludibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014860455.1", "gtdb_species": "s__PNKE01 sp014860455", "ani": 76.741, "matched_fragments": 286, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__PNKE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015277775.1", "gtdb_species": "s__Paludibaculum fermentans", "ani": 76.6648, "matched_fragments": 312, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__Paludibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017307505.1", "gtdb_species": "s__Paludibaculum sp017307505", "ani": 76.6219, "matched_fragments": 297, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__Paludibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018268715.1", "gtdb_species": "s__TMP-7 sp018268715", "ani": 76.199, "matched_fragments": 213, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__TMP-7", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003487005.1", "gtdb_species": "s__PNKE01 sp003487005", "ani": 76.1799, "matched_fragments": 153, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__PNKE01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.28", "min_intra_species_ani": "95.28", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018268835.1", "gtdb_species": "s__Solibacter sp018268835", "ani": 76.0942, "matched_fragments": 231, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__Solibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003142355.1", "gtdb_species": "s__Fen-178 sp003142355", "ani": 75.6765, "matched_fragments": 154, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__Fen-178", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003170915.1", "gtdb_species": "s__Fen-178 sp003170915", "ani": 75.6491, "matched_fragments": 114, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__Fen-178", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005808475.1", "gtdb_species": "s__SYLY01 sp005808475", "ani": 75.327, "matched_fragments": 132, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__SYLY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018268935.1", "gtdb_species": "s__CADEFT01 sp018268935", "ani": 75.3174, "matched_fragments": 108, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Acidobacteriae;o__Bryobacterales;f__Bryobacteraceae;g__CADEFT01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000245055.1", "gtdb_species": "s__Solidesulfovibrio sp000245055", "ani": 75.2854, "matched_fragments": 55, "total_fragments": 1479, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Solidesulfovibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.241, "cell_length": -0.034, "doubling_h": 1.0, "growth_tmp": 25.25, "optimum_tmp": 25.0, "optimum_ph": 6.0, "genome_size": 5747993.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Acidobacteriota", "c__Terriglobia", "o__Bryobacterales", "f__Bryobacteraceae", "g__JANWVO01", "s__JANWVO01 sp026002855" ], "_genome_taxon": [ "Bryobacteraceae", "bacterium", "d__Bacteria", "p__Acidobacteriota", "c__Terriglobia", "o__Bryobacterales", "f__Bryobacteraceae", "g__JANWVO01", "s__JANWVO01 sp026002855", "Bacteria", "Acidobacteriota", "Terriglobia", "Bryobacterales", "Bryobacteraceae", "JANWVO01", "JANWVO01", "sp026002855" ], "_meo": [ { "id": "MEO_0000029", "label": "hot spring" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }