{
    "type": "genome",
    "identifier": "GCA_026003375.1",
    "organism": "Thermonema sp.",
    "title": "Thermonema sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "RIKEN-BRC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026003375.1",
        "bioproject": "PRJDB11609",
        "biosample": "SAMD00319357",
        "wgs_master": "BPHD00000000.1",
        "refseq_category": "na",
        "taxid": "2231181",
        "species_taxid": "2231181",
        "organism_name": "Thermonema sp.",
        "infraspecific_name": "",
        "isolate": "KatS3mg033",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/11",
        "asm_name": "ASM2600337v1",
        "submitter": "RIKEN-BRC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/003/375/GCA_026003375.1_ASM2600337v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-11",
    "dateModified": "2022-10-11",
    "datePublished": "2022-10-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermonema sp."
        ],
        "sample_taxid": [
            "2231181"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Shizuoka, Higashi-izu, Arayu"
        ],
        "sample_host_location_id": [],
        "data_size": "0.801 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2846631",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "1194078",
        "N50 (bp)": "1008875",
        "Gap Ratio (%)": "0.003513",
        "GCcontent (%)": "48.8",
        "Number of CDSs": "2444",
        "Average Protein Length": "347.4",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "9",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thermonema rossianum",
                "strain": "strain=DSM 10300",
                "accession": "GCA_000426825.1",
                "taxid": 55505,
                "species_taxid": 55505,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.5774,
                "matched_fragments": 872,
                "total_fragments": 948,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermonema lapsum",
                "strain": "strain=DSM 5718",
                "accession": "GCA_011761635.1",
                "taxid": 28195,
                "species_taxid": 28195,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0163,
                "matched_fragments": 607,
                "total_fragments": 948,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000426825.1",
                "gtdb_species": "s__Thermonema rossianum",
                "ani": 97.5774,
                "matched_fragments": 872,
                "total_fragments": 948,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Thermonemataceae;g__Thermonema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_011761635.1",
                "gtdb_species": "s__Thermonema lapsum",
                "ani": 80.9959,
                "matched_fragments": 609,
                "total_fragments": 948,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Thermonemataceae;g__Thermonema",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": -0.281,
        "growth_tmp": 57.475,
        "optimum_tmp": 60.0,
        "optimum_ph": null,
        "genome_size": 2956866.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Thermonemataceae",
        "g__Thermonema",
        "s__Thermonema rossianum"
    ],
    "_genome_taxon": [
        "Thermonema",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Cytophagales",
        "f__Thermonemataceae",
        "g__Thermonema",
        "s__Thermonema rossianum",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Cytophagales",
        "Thermonemataceae",
        "Thermonema",
        "Thermonema",
        "rossianum"
    ],
    "_meo": [
        {
            "id": "MEO_0000029",
            "label": "hot spring"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}