{
    "type": "genome",
    "identifier": "GCA_026003535.1",
    "organism": "Rhodothermaceae bacterium",
    "title": "Rhodothermaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "RIKEN-BRC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026003535.1",
        "bioproject": "PRJDB11609",
        "biosample": "SAMD00319367",
        "wgs_master": "BPHM00000000.1",
        "refseq_category": "na",
        "taxid": "2026787",
        "species_taxid": "2026787",
        "organism_name": "Rhodothermaceae bacterium",
        "infraspecific_name": "",
        "isolate": "KatS3mg043",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/11",
        "asm_name": "ASM2600353v1",
        "submitter": "RIKEN-BRC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/003/535/GCA_026003535.1_ASM2600353v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-11",
    "dateModified": "2022-10-11",
    "datePublished": "2022-10-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rhodothermaceae bacterium"
        ],
        "sample_taxid": [
            "2026787"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Shizuoka, Higashi-izu, Arayu"
        ],
        "sample_host_location_id": [],
        "data_size": "0.730 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 70.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2660795",
        "Number of Sequences": "38",
        "Longest Sequences (bp)": "384205",
        "N50 (bp)": "153950",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.8",
        "Number of CDSs": "2253",
        "Average Protein Length": "343.4",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rhodocaloribacter litoris",
                "strain": "strain=ISCAR-4553",
                "accession": "GCA_011682235.2",
                "taxid": 2558931,
                "species_taxid": 2558931,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.653,
                "matched_fragments": 818,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salinibacter ruber",
                "strain": "strain=DSM 13855; M31",
                "accession": "GCA_000013045.1",
                "taxid": 146919,
                "species_taxid": 146919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3391,
                "matched_fragments": 97,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubrivirga marina",
                "strain": "strain=SAORIC-28",
                "accession": "GCA_002283365.1",
                "taxid": 1196024,
                "species_taxid": 1196024,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3094,
                "matched_fragments": 163,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rubricoccus marinus",
                "strain": "strain=SG-29",
                "accession": "GCA_002257665.1",
                "taxid": 716817,
                "species_taxid": 716817,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1907,
                "matched_fragments": 103,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodothermus profundi",
                "strain": "strain=DSM 22212",
                "accession": "GCA_900142415.1",
                "taxid": 633813,
                "species_taxid": 633813,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1133,
                "matched_fragments": 54,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimonas halophila",
                "strain": "strain=KCTC 42399",
                "accession": "GCA_002554705.1",
                "taxid": 1469170,
                "species_taxid": 1469170,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4851,
                "matched_fragments": 50,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces bauhiniae",
                "strain": "strain=Bv016",
                "accession": "GCA_004784475.1",
                "taxid": 2340725,
                "species_taxid": 2340725,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8612,
                "matched_fragments": 101,
                "total_fragments": 865,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 70.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_011682235.1",
                "gtdb_species": "s__ISCAR-4553 sp011682235",
                "ani": 98.6456,
                "matched_fragments": 793,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__ISCAR-4553;g__ISCAR-4553",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003285105.1",
                "gtdb_species": "s__MEBICO9517 sp003285105",
                "ani": 79.5196,
                "matched_fragments": 330,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__MEBIC09517;g__MEBICO9517",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.96",
                "min_intra_species_ani": "96.85",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000024845.1",
                "gtdb_species": "s__Rhodothermus marinus",
                "ani": 77.6453,
                "matched_fragments": 190,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__Rhodothermaceae;g__Rhodothermus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.50",
                "min_intra_species_ani": "95.42",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_015487635.1",
                "gtdb_species": "s__Rhodothermus sp015487635",
                "ani": 77.3039,
                "matched_fragments": 144,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__Rhodothermaceae;g__Rhodothermus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_009908885.1",
                "gtdb_species": "s__JAAAOL01 sp009908885",
                "ani": 77.1985,
                "matched_fragments": 189,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__Salinibacteraceae;g__JAAAOL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017643395.1",
                "gtdb_species": "s__JABDJZ01 sp017643395",
                "ani": 76.24,
                "matched_fragments": 94,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__UBA10348;g__JABDJZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002257665.1",
                "gtdb_species": "s__Rubricoccus marinus",
                "ani": 76.2279,
                "matched_fragments": 104,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__Rubricoccaceae;g__Rubricoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012269805.1",
                "gtdb_species": "s__Rubrivirga sp012269805",
                "ani": 76.2054,
                "matched_fragments": 106,
                "total_fragments": 865,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Rhodothermia;o__Rhodothermales;f__Rubricoccaceae;g__Rubrivirga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.768,
        "doubling_h": 0.661,
        "growth_tmp": 54.5,
        "optimum_tmp": 55.062,
        "optimum_ph": 7.687,
        "genome_size": 4807990.0,
        "gc_content": 68.7,
        "coding_genes": 3702.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 44.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.333,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.5,
        "thermophilic_range_tmp": 0.5,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Rhodothermia",
        "o__Rhodothermales",
        "f__ISCAR-4553",
        "g__Rhodocaloribacter",
        "s__Rhodocaloribacter litoris"
    ],
    "_genome_taxon": [
        "Rhodothermaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Rhodothermia",
        "o__Rhodothermales",
        "f__ISCAR-4553",
        "g__Rhodocaloribacter",
        "s__Rhodocaloribacter litoris",
        "Bacteria",
        "Bacteroidota",
        "Rhodothermia",
        "Rhodothermales",
        "ISCAR-4553",
        "Rhodocaloribacter",
        "Rhodocaloribacter",
        "litoris"
    ],
    "_meo": [
        {
            "id": "MEO_0000029",
            "label": "hot spring"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}