{
    "type": "genome",
    "identifier": "GCA_026003855.1",
    "organism": "Roseiflexus sp.",
    "title": "Roseiflexus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "RIKEN-BRC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026003855.1",
        "bioproject": "PRJDB11609",
        "biosample": "SAMD00319382",
        "wgs_master": "BPIA00000000.1",
        "refseq_category": "na",
        "taxid": "2562120",
        "species_taxid": "2562120",
        "organism_name": "Roseiflexus sp.",
        "infraspecific_name": "",
        "isolate": "KatS3mg058",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/11",
        "asm_name": "ASM2600385v1",
        "submitter": "RIKEN-BRC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/003/855/GCA_026003855.1_ASM2600385v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-11",
    "dateModified": "2022-10-11",
    "datePublished": "2022-10-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Roseiflexus sp."
        ],
        "sample_taxid": [
            "2562120"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Shizuoka, Higashi-izu, Arayu"
        ],
        "sample_host_location_id": [],
        "data_size": "1.527 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5573896",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "5080960",
        "N50 (bp)": "5080960",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "60.7",
        "Number of CDSs": "4506",
        "Average Protein Length": "343.6",
        "Coding Ratio (%)": "83.3",
        "Number of rRNAs": "4",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "15"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Roseiflexus castenholzii",
                "strain": "strain=DSM 13941",
                "accession": "GCA_000017805.1",
                "taxid": 120962,
                "species_taxid": 120962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.4388,
                "matched_fragments": 1783,
                "total_fragments": 1857,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Chloroflexus aggregans",
                "strain": "strain=DSM 9485",
                "accession": "GCA_000021945.1",
                "taxid": 152260,
                "species_taxid": 152260,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3516,
                "matched_fragments": 111,
                "total_fragments": 1857,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chloroflexus islandicus",
                "strain": "strain=isl-2",
                "accession": "GCA_001650695.1",
                "taxid": 1707952,
                "species_taxid": 1707952,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9358,
                "matched_fragments": 130,
                "total_fragments": 1857,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chloroflexus aurantiacus",
                "strain": "strain=J-10-fl",
                "accession": "GCA_000018865.1",
                "taxid": 1108,
                "species_taxid": 1108,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.869,
                "matched_fragments": 90,
                "total_fragments": 1857,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis lindanitolerans",
                "strain": "strain=WS5A3p",
                "accession": "GCA_002993885.1",
                "taxid": 2054227,
                "species_taxid": 2054227,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9549,
                "matched_fragments": 56,
                "total_fragments": 1857,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium cajani",
                "strain": "strain=1010",
                "accession": "GCA_009759665.1",
                "taxid": 1928661,
                "species_taxid": 1928661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7641,
                "matched_fragments": 67,
                "total_fragments": 1857,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000017805.1",
                "gtdb_species": "s__Roseiflexus castenholzii",
                "ani": 98.4345,
                "matched_fragments": 1783,
                "total_fragments": 1857,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__Roseiflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000016665.1",
                "gtdb_species": "s__Roseiflexus sp000016665",
                "ani": 80.0564,
                "matched_fragments": 1196,
                "total_fragments": 1857,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__Roseiflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.43",
                "min_intra_species_ani": "98.43",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017743475.1",
                "gtdb_species": "s__Roseiflexus sp017743475",
                "ani": 78.8662,
                "matched_fragments": 897,
                "total_fragments": 1857,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__Roseiflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.84",
                "min_intra_species_ani": "95.62",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_013388755.1",
                "gtdb_species": "s__JACAEQ01 sp013388755",
                "ani": 77.0846,
                "matched_fragments": 454,
                "total_fragments": 1857,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__JACAEQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001399705.1",
                "gtdb_species": "s__Kouleothrix aurantiaca",
                "ani": 76.2363,
                "matched_fragments": 62,
                "total_fragments": 1857,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__Kouleothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018266315.1",
                "gtdb_species": "s__Kouleothrix sp018266315",
                "ani": 75.9994,
                "matched_fragments": 74,
                "total_fragments": 1857,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__Kouleothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016717335.1",
                "gtdb_species": "s__JADKFS01 sp016717335",
                "ani": 75.9551,
                "matched_fragments": 221,
                "total_fragments": 1857,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__JADKFS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016722075.1",
                "gtdb_species": "s__Kouleothrix sp016722075",
                "ani": 75.9458,
                "matched_fragments": 163,
                "total_fragments": 1857,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Roseiflexaceae;g__Kouleothrix",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012031775.1",
                "gtdb_species": "s__JAAUTF01 sp012031775",
                "ani": 75.6119,
                "matched_fragments": 71,
                "total_fragments": 1857,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__JAAUTF01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004138165.1",
                "gtdb_species": "s__Chloroploca sp004138165",
                "ani": 75.3072,
                "matched_fragments": 68,
                "total_fragments": 1857,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Chloroploca",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 48.0,
        "optimum_tmp": 50.0,
        "optimum_ph": 7.75,
        "genome_size": 5723298.4,
        "gc_content": 60.7,
        "coding_genes": 4445.333,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 48.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Chloroflexia",
        "o__Chloroflexales",
        "f__Roseiflexaceae",
        "g__Roseiflexus",
        "s__Roseiflexus castenholzii"
    ],
    "_genome_taxon": [
        "Roseiflexus",
        "sp.",
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Chloroflexia",
        "o__Chloroflexales",
        "f__Roseiflexaceae",
        "g__Roseiflexus",
        "s__Roseiflexus castenholzii",
        "Bacteria",
        "Chloroflexota",
        "Chloroflexia",
        "Chloroflexales",
        "Roseiflexaceae",
        "Roseiflexus",
        "Roseiflexus",
        "castenholzii"
    ],
    "_meo": [
        {
            "id": "MEO_0000029",
            "label": "hot spring"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}