{
    "type": "genome",
    "identifier": "GCA_026004315.1",
    "organism": "Nitrospiraceae bacterium",
    "title": "Nitrospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "RIKEN-BRC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026004315.1",
        "bioproject": "PRJDB11609",
        "biosample": "SAMD00319406",
        "wgs_master": "BPIW00000000.1",
        "refseq_category": "na",
        "taxid": "2026770",
        "species_taxid": "2026770",
        "organism_name": "Nitrospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "KatS3mg082",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/11",
        "asm_name": "ASM2600431v1",
        "submitter": "RIKEN-BRC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/004/315/GCA_026004315.1_ASM2600431v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-11",
    "dateModified": "2022-10-11",
    "datePublished": "2022-10-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrospiraceae bacterium"
        ],
        "sample_taxid": [
            "2026770"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Shizuoka, Higashi-izu, Arayu"
        ],
        "sample_host_location_id": [],
        "data_size": "0.913 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 33.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3251924",
        "Number of Sequences": "101",
        "Longest Sequences (bp)": "198487",
        "N50 (bp)": "50164",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.3",
        "Number of CDSs": "3345",
        "Average Protein Length": "262.1",
        "Coding Ratio (%)": "80.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "8"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrospira moscoviensis",
                "strain": "strain=NSP M-1",
                "accession": "GCA_001273775.1",
                "taxid": 42253,
                "species_taxid": 42253,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0035,
                "matched_fragments": 131,
                "total_fragments": 1040,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 33.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002420105.1",
                "gtdb_species": "s__Nitrospira_C sp002420105",
                "ani": 77.0844,
                "matched_fragments": 111,
                "total_fragments": 1040,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900299325.1",
                "gtdb_species": "s__OMJK01 sp900299325",
                "ani": 77.014,
                "matched_fragments": 73,
                "total_fragments": 1040,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__OMJK01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016873495.1",
                "gtdb_species": "s__SYGV01 sp016873495",
                "ani": 76.9821,
                "matched_fragments": 93,
                "total_fragments": 1040,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__SYGV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004296885.1",
                "gtdb_species": "s__SYGV01 sp004296885",
                "ani": 76.9265,
                "matched_fragments": 93,
                "total_fragments": 1040,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__SYGV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016207025.1",
                "gtdb_species": "s__JACQQM01 sp016207025",
                "ani": 76.707,
                "matched_fragments": 102,
                "total_fragments": 1040,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__JACQQM01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000196815.1",
                "gtdb_species": "s__Nitrospira_A defluvii_A",
                "ani": 76.4524,
                "matched_fragments": 67,
                "total_fragments": 1040,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.59",
                "min_intra_species_ani": "99.59",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016201805.1",
                "gtdb_species": "s__SCVQ01 sp016201805",
                "ani": 76.3746,
                "matched_fragments": 59,
                "total_fragments": 1040,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__SCVQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900170025.1",
                "gtdb_species": "s__Nitrospira_A sp900170025",
                "ani": 76.2261,
                "matched_fragments": 82,
                "total_fragments": 1040,
                "gtdb_taxonomy": "d__Bacteria;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Nitrospira_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.32",
                "min_intra_species_ani": "96.85",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 19,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.261,
        "cell_length": 0.592,
        "doubling_h": 1.049,
        "growth_tmp": 51.687,
        "optimum_tmp": 54.437,
        "optimum_ph": 5.662,
        "genome_size": 3299186.384,
        "gc_content": 51.233,
        "coding_genes": 3216.752,
        "rRNA16S_genes": 1.428,
        "tRNA_genes": 47.476,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.6,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.666,
        "aerobic_respiration": 0.333,
        "mesophilic_range_tmp": 0.666,
        "thermophilic_range_tmp": 0.333,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.4,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.4,
        "spiral_cell_shape": 0.2
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Nitrospiria",
        "o__Nitrospirales",
        "f__Nitrospiraceae",
        "g__",
        "s__"
    ],
    "_genome_taxon": [
        "Nitrospiraceae",
        "bacterium",
        "d__Bacteria",
        "p__Nitrospirota",
        "c__Nitrospiria",
        "o__Nitrospirales",
        "f__Nitrospiraceae",
        "g__",
        "s__",
        "Bacteria",
        "Nitrospirota",
        "Nitrospiria",
        "Nitrospirales",
        "Nitrospiraceae",
        "g",
        "",
        "",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000029",
            "label": "hot spring"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}