{ "type": "genome", "identifier": "GCA_026004735.1", "organism": "Isosphaeraceae bacterium", "title": "Isosphaeraceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "RIKEN-BRC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026004735.1", "bioproject": "PRJDB11609", "biosample": "SAMD00319432", "wgs_master": "BPJS00000000.1", "refseq_category": "na", "taxid": "2691532", "species_taxid": "2691532", "organism_name": "Isosphaeraceae bacterium", "infraspecific_name": "", "isolate": "KatS3mg108", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/11", "asm_name": "ASM2600473v1", "submitter": "RIKEN-BRC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/004/735/GCA_026004735.1_ASM2600473v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-11", "dateModified": "2022-10-11", "datePublished": "2022-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Isosphaeraceae bacterium" ], "sample_taxid": [ "2691532" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Shizuoka, Higashi-izu, Arayu" ], "sample_host_location_id": [], "data_size": "1.323 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4822286", "Number of Sequences": "1", "Longest Sequences (bp)": "4822286", "N50 (bp)": "4822286", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "3924", "Average Protein Length": "361.2", "Coding Ratio (%)": "88.2", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tautonia sociabilis", "strain": "strain=GM2012", "accession": "GCA_003977685.1", "taxid": 2080755, "species_taxid": 2080755, "relation_to_type": "type", "validated": true, "ani": 76.7854, "matched_fragments": 282, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera borealis", "strain": "strain=PX4", "accession": "GCA_001956985.1", "taxid": 1387353, "species_taxid": 1387353, "relation_to_type": "type", "validated": true, "ani": 76.4288, "matched_fragments": 255, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera rhizosphaereae", "strain": "strain=JC665", "accession": "GCA_011065895.1", "taxid": 2711216, "species_taxid": 2711216, "relation_to_type": "type", "validated": true, "ani": 76.3094, "matched_fragments": 193, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisphaera giovannonii", "strain": "strain=OJF2", "accession": "GCA_008087625.1", "taxid": 406548, "species_taxid": 406548, "relation_to_type": "type", "validated": true, "ani": 76.3071, "matched_fragments": 282, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tautonia plasticadhaerens", "strain": "strain=ElP", "accession": "GCA_007752535.1", "taxid": 2527974, "species_taxid": 2527974, "relation_to_type": "type", "validated": true, "ani": 76.2932, "matched_fragments": 306, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera soli", "strain": "strain=JC670", "accession": "GCA_011064595.1", "taxid": 2712865, "species_taxid": 2712865, "relation_to_type": "type", "validated": true, "ani": 76.1457, "matched_fragments": 272, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Singulisphaera acidiphila", "strain": "strain=DSM 18658", "accession": "GCA_000242455.3", "taxid": 466153, "species_taxid": 466153, "relation_to_type": "type", "validated": true, "ani": 75.9078, "matched_fragments": 180, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Singulisphaera acidiphila", "strain": "strain=DSM 18658", "accession": "GCA_000255675.1", "taxid": 466153, "species_taxid": 466153, "relation_to_type": "type", "validated": true, "ani": 75.5545, "matched_fragments": 175, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fimbriiglobus ruber", "strain": "strain=SP5", "accession": "GCA_002197845.1", "taxid": 1908690, "species_taxid": 1908690, "relation_to_type": "type", "validated": true, "ani": 75.1692, "matched_fragments": 102, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas leidyi", "strain": "strain=DSM 4733", "accession": "GCA_011761945.1", "taxid": 68569, "species_taxid": 68569, "relation_to_type": "type", "validated": true, "ani": 74.8337, "matched_fragments": 55, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus soli", "strain": "strain=ZKHCc1 1396", "accession": "GCA_014930455.1", "taxid": 2710757, "species_taxid": 2710757, "relation_to_type": "type", "validated": true, "ani": 74.7768, "matched_fragments": 63, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Miltoncostaea oceani", "strain": "strain=SCSIO 61214", "accession": "GCA_018141545.1", "taxid": 2843216, "species_taxid": 2843216, "relation_to_type": "type", "validated": true, "ani": 74.7273, "matched_fragments": 76, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces verrucosisporus", "strain": "strain=CPB1-1", "accession": "GCA_017114865.1", "taxid": 1695161, "species_taxid": 1695161, "relation_to_type": "type", "validated": true, "ani": 74.6869, "matched_fragments": 86, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 74.6798, "matched_fragments": 100, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lutulentus", "strain": "strain=DSM 45883", "accession": "GCA_014191235.1", "taxid": 1287878, "species_taxid": 1287878, "relation_to_type": "type", "validated": true, "ani": 74.6777, "matched_fragments": 94, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes ovalisporus", "strain": "strain=LDG1-06", "accession": "GCA_016834655.1", "taxid": 2810368, "species_taxid": 2810368, "relation_to_type": "type", "validated": true, "ani": 74.6643, "matched_fragments": 130, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes lichenicola", "strain": "strain=LDG1-01", "accession": "GCA_016785085.1", "taxid": 2802976, "species_taxid": 2802976, "relation_to_type": "type", "validated": true, "ani": 74.6275, "matched_fragments": 118, "total_fragments": 1607, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003977685.1", "gtdb_species": "s__Tautonia sociabilis", "ani": 76.7774, "matched_fragments": 282, "total_fragments": 1607, "gtdb_taxonomy": 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