{ "type": "genome", "identifier": "GCA_026004955.1", "organism": "Erythrobacter sp.", "title": "Erythrobacter sp.", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "RIKEN-BRC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026004955.1", "bioproject": "PRJDB11609", "biosample": "SAMD00319444", "wgs_master": "BPKD00000000.1", "refseq_category": "na", "taxid": "1042", "species_taxid": "1042", "organism_name": "Erythrobacter sp.", "infraspecific_name": "", "isolate": "KatS3mg120", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/11", "asm_name": "ASM2600495v1", "submitter": "RIKEN-BRC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/004/955/GCA_026004955.1_ASM2600495v1", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-11", "dateModified": "2022-10-11", "datePublished": "2022-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Erythrobacter sp." ], "sample_taxid": [ "1042" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Shizuoka, Higashi-izu, Arayu" ], "sample_host_location_id": [], "data_size": "0.797 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2965871", "Number of Sequences": "10", "Longest Sequences (bp)": "919905", "N50 (bp)": "380315", "Gap Ratio (%)": 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"relation_to_type": "type", "validated": true, "ani": 82.078, "matched_fragments": 695, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter neustonensis", "strain": "strain=DSM 9434", "accession": "GCA_001663175.1", "taxid": 1112, "species_taxid": 1112, "relation_to_type": "type", "validated": true, "ani": 81.5485, "matched_fragments": 687, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=DSM 8510", "accession": "GCA_014195675.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 81.3419, "matched_fragments": 691, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=JCM 10282", "accession": "GCA_009828055.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 81.2939, "matched_fragments": 703, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 78.817, "matched_fragments": 404, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania polymorpha", "strain": "strain=1NDH17", "accession": "GCA_019711435.1", "taxid": 2867234, "species_taxid": 2867234, "relation_to_type": "type", "validated": true, "ani": 78.5673, "matched_fragments": 343, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alteriqipengyuania abyssalis", "strain": "strain=NZ-12B", "accession": "GCA_019857185.1", "taxid": 2860200, "species_taxid": 2860200, "relation_to_type": "type", "validated": true, "ani": 78.4432, "matched_fragments": 410, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantiacibacter arachoides", "strain": "strain=CGMCC 1.15507", "accession": "GCA_014643415.1", "taxid": 1850444, "species_taxid": 1850444, "relation_to_type": "type", "validated": true, "ani": 78.3508, "matched_fragments": 335, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiapuensis", "strain": "strain=1NDW9", "accession": "GCA_019711395.1", "taxid": 2867236, "species_taxid": 2867236, "relation_to_type": "type", "validated": true, "ani": 78.3135, "matched_fragments": 365, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania gelatinilytica", "strain": "strain=1NDH1", "accession": "GCA_019711315.1", "taxid": 2867231, "species_taxid": 2867231, "relation_to_type": "type", "validated": true, "ani": 78.2843, "matched_fragments": 357, "total_fragments": 983, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000422985.1", "gtdb_species": "s__Erythrobacter cryptus", "ani": 98.9459, "matched_fragments": 895, "total_fragments": 983, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_011054555.1", "gtdb_species": "s__Erythrobacter sp011054555", "ani": 83.5476, "matched_fragments": 558, "total_fragments": 983, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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