{ "type": "genome", "identifier": "GCA_026004995.1", "organism": "Caldimonas sp.", "title": "Caldimonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "RIKEN-BRC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026004995.1", "bioproject": "PRJDB11609", "biosample": "SAMD00319446", "wgs_master": "BPKF00000000.1", "refseq_category": "na", "taxid": "2838790", "species_taxid": "2838790", "organism_name": "Caldimonas sp.", "infraspecific_name": "", "isolate": "KatS3mg122", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/11", "asm_name": "ASM2600499v1", "submitter": "RIKEN-BRC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/004/995/GCA_026004995.1_ASM2600499v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-11", "dateModified": "2022-10-11", "datePublished": "2022-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Caldimonas sp." ], "sample_taxid": [ "2838790" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Shizuoka, Higashi-izu, Arayu" ], "sample_host_location_id": [], "data_size": "0.984 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3594407", "Number of Sequences": "15", "Longest Sequences (bp)": "1151664", "N50 (bp)": "610242", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.1", "Number of CDSs": "3379", "Average Protein Length": "322.6", "Coding Ratio (%)": "91.0", "Number of rRNAs": "6", "Number of tRNAs": "50", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 80.6204, "matched_fragments": 618, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_003349825.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 80.5505, "matched_fragments": 615, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_002933415.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 80.5385, "matched_fragments": 621, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella brevitalea", "strain": "strain=DSM 7029", "accession": "GCA_001017435.1", "taxid": 413882, "species_taxid": 413882, "relation_to_type": "type", "validated": true, "ani": 79.4035, "matched_fragments": 538, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium gelatinicum", "strain": "strain=R-5-52-3", "accession": "GCA_008033445.1", "taxid": 2598725, "species_taxid": 2598725, "relation_to_type": "type", "validated": true, "ani": 79.0974, "matched_fragments": 134, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 79.0805, "matched_fragments": 438, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas australica", "strain": "strain=DSM 1124", "accession": "GCA_000430725.1", "taxid": 364039, "species_taxid": 364039, "relation_to_type": "type", "validated": true, "ani": 78.8665, "matched_fragments": 489, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas caseinilytica", "strain": "strain=G-1-1-14", "accession": "GCA_012927045.1", "taxid": 2728836, "species_taxid": 2728836, "relation_to_type": "type", "validated": true, "ani": 78.8458, "matched_fragments": 509, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas lata", "strain": "strain=NBRC 102462", "accession": "GCA_001571085.1", "taxid": 45677, "species_taxid": 45677, "relation_to_type": "type", "validated": true, "ani": 78.7586, "matched_fragments": 462, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella azotifigens", "strain": "strain=DSM 21438", "accession": "GCA_006519715.1", "taxid": 513160, "species_taxid": 513160, "relation_to_type": "type", "validated": true, "ani": 78.6715, "matched_fragments": 357, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus hippei", "strain": "strain=DSM 566", "accession": "GCA_003201595.1", "taxid": 744406, "species_taxid": 744406, "relation_to_type": "type", "validated": true, "ani": 78.6709, "matched_fragments": 415, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans", "strain": "strain=ATCC 13338", "accession": "GCA_900156335.1", "taxid": 34103, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 78.6313, "matched_fragments": 441, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella benzenivorans", "strain": "strain=B7", "accession": "GCA_020387415.1", "taxid": 2831643, "species_taxid": 2831643, "relation_to_type": "type", "validated": true, "ani": 78.6282, "matched_fragments": 418, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium lacunae", "strain": "strain=KMB7", "accession": "GCA_004310865.1", "taxid": 2528630, "species_taxid": 2528630, "relation_to_type": "type", "validated": true, "ani": 78.5949, "matched_fragments": 343, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus sulfidivorans", "strain": "strain=D-501", "accession": "GCA_013426975.1", "taxid": 639200, "species_taxid": 639200, "relation_to_type": "type", "validated": true, "ani": 78.5475, "matched_fragments": 446, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans subsp. natans", "strain": "strain=DSM 6575", "accession": "GCA_000689195.1", "taxid": 882627, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 78.5445, "matched_fragments": 438, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium soli", "strain": "strain=SJQ9", "accession": "GCA_003933735.1", "taxid": 2493092, "species_taxid": 2493092, "relation_to_type": "type", "validated": true, "ani": 78.532, "matched_fragments": 382, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium parvum", "strain": "strain=B6", "accession": "GCA_001447195.1", "taxid": 70584, "species_taxid": 70584, "relation_to_type": "type", "validated": true, "ani": 78.379, "matched_fragments": 355, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobacter gummiphilus", "strain": "strain=NBRC 109400", "accession": "GCA_002762215.1", "taxid": 946333, "species_taxid": 946333, "relation_to_type": "type", "validated": true, "ani": 78.2509, "matched_fragments": 443, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobacter gummiphilus", "strain": "strain=NS21", "accession": "GCA_002116905.1", "taxid": 946333, "species_taxid": 946333, "relation_to_type": "type", "validated": true, "ani": 78.2194, "matched_fragments": 442, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas terrae", "strain": "strain=R29", "accession": "GCA_006265115.1", "taxid": 2546226, "species_taxid": 2546226, "relation_to_type": "type", "validated": true, "ani": 76.8275, "matched_fragments": 123, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas malthae", "strain": "strain=CC-JY-1", "accession": "GCA_000747075.1", "taxid": 354197, "species_taxid": 354197, "relation_to_type": "type", "validated": true, "ani": 76.6707, "matched_fragments": 135, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 76.6706, "matched_fragments": 118, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas metalli", "strain": "strain=CF5-1", "accession": "GCA_000747155.1", "taxid": 948077, "species_taxid": 948077, "relation_to_type": "type", "validated": true, "ani": 76.4088, "matched_fragments": 132, "total_fragments": 1191, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000381125.1", "gtdb_species": "s__Caldimonas manganoxidans", "ani": 98.8532, "matched_fragments": 1027, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Caldimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.73", "min_intra_species_ani": "98.73", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_002930615.1", "gtdb_species": "s__Zhizhongheella caldifontis", "ani": 83.2831, "matched_fragments": 826, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Zhizhongheella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000429065.1", "gtdb_species": "s__Silanimonas lenta", "ani": 81.4495, "matched_fragments": 148, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Silanimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015476235.1", "gtdb_species": "s__Schlegelella thermodepolymerans", "ani": 80.6282, "matched_fragments": 617, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Schlegelella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.68", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_006386545.1", "gtdb_species": "s__Pseudorivibacter rhizosphaerae", "ani": 79.4789, "matched_fragments": 558, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudorivibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001017435.1", "gtdb_species": "s__Polyangium_A brachysporum", "ani": 79.4323, "matched_fragments": 535, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polyangium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003569765.1", "gtdb_species": "s__Aquabacterium_B tepidiphilum", "ani": 79.2162, "matched_fragments": 520, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017302485.1", "gtdb_species": "s__Ideonella sp017302485", "ani": 79.1531, "matched_fragments": 315, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ideonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003265685.1", "gtdb_species": "s__Piscinibacter caeni", "ani": 79.0663, "matched_fragments": 528, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Piscinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008033445.1", "gtdb_species": "s__Vulcaniibacterium_B gelatinicum", "ani": 79.0629, "matched_fragments": 135, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Vulcaniibacterium_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018069875.1", "gtdb_species": "s__Ideonella sp018069875", "ani": 79.0339, "matched_fragments": 500, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ideonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "98.74", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016706565.1", "gtdb_species": "s__Piscinibacter sp016706565", "ani": 78.9726, "matched_fragments": 527, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Piscinibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.34", "min_intra_species_ani": "98.34", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001571085.1", "gtdb_species": "s__Azohydromonas lata", "ani": 78.7957, "matched_fragments": 458, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Azohydromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000015725.1", "gtdb_species": "s__Methylibium petroleiphilum", "ani": 78.7833, "matched_fragments": 434, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Methylibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "96.03", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.81", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001425905.1", "gtdb_species": "s__Methylibium sp001425905", "ani": 78.7768, "matched_fragments": 429, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Methylibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004310865.1", "gtdb_species": "s__Aquabacterium lacunae", "ani": 78.5828, "matched_fragments": 344, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009996515.1", "gtdb_species": "s__Pelomonas sp009996515", "ani": 78.4935, "matched_fragments": 434, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pelomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902826655.1", "gtdb_species": "s__Methylibium sp902826655", "ani": 78.4475, "matched_fragments": 428, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Methylibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003241055.1", "gtdb_species": "s__Pelomonas depolymerans_A", "ani": 78.3938, "matched_fragments": 422, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pelomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015657635.1", "gtdb_species": "s__Kinneretia sp015657635", "ani": 78.1804, "matched_fragments": 411, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Kinneretia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018334015.1", "gtdb_species": "s__Silanimonas sp018334015", "ani": 77.2616, "matched_fragments": 100, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Silanimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018122625.2", "gtdb_species": "s__Coralloluteibacterium stylophorae", "ani": 75.9888, "matched_fragments": 141, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Coralloluteibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003497545.1", "gtdb_species": "s__Arenimonas sp003497545", "ani": 75.8302, "matched_fragments": 86, "total_fragments": 1191, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Arenimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "99.43", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 48.0, "optimum_tmp": 52.5, "optimum_ph": null, "genome_size": 3488605.0, "gc_content": 65.977, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Caldimonas", "s__Caldimonas manganoxidans" ], "_genome_taxon": [ "Caldimonas", "sp.", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Caldimonas", "s__Caldimonas manganoxidans", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Caldimonas", "Caldimonas", "manganoxidans" ], "_meo": [ { "id": "MEO_0000029", "label": "hot spring" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }