{ "type": "genome", "identifier": "GCA_026005075.1", "organism": "Xanthomonadaceae bacterium", "title": "Xanthomonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "RIKEN-BRC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026005075.1", "bioproject": "PRJDB11609", "biosample": "SAMD00319450", "wgs_master": "BPKJ00000000.1", "refseq_category": "na", "taxid": "1926873", "species_taxid": "1926873", "organism_name": "Xanthomonadaceae bacterium", "infraspecific_name": "", "isolate": "KatS3mg126", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/11", "asm_name": "ASM2600507v1", "submitter": "RIKEN-BRC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/005/075/GCA_026005075.1_ASM2600507v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-11", "dateModified": "2022-10-11", "datePublished": "2022-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Xanthomonadaceae bacterium" ], "sample_taxid": [ "1926873" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Shizuoka, Higashi-izu, Arayu" ], "sample_host_location_id": [], "data_size": "0.760 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2836920", "Number of Sequences": "9", "Longest Sequences (bp)": "924866", "N50 (bp)": "366638", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.4", "Number of CDSs": "2597", "Average Protein Length": "335.6", "Coding Ratio (%)": "92.2", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vulcaniibacterium gelatinicum", "strain": "strain=R-5-52-3", "accession": "GCA_008033445.1", "taxid": 2598725, "species_taxid": 2598725, "relation_to_type": "type", "validated": true, "ani": 79.6999, "matched_fragments": 396, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas taiwanensis", "strain": "strain=DSM 22914", "accession": "GCA_010093135.1", "taxid": 176598, "species_taxid": 176598, "relation_to_type": "type", "validated": true, "ani": 79.5923, "matched_fragments": 392, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=YIM 77520", "accession": "GCA_008033455.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 79.5023, "matched_fragments": 406, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium tengchongense", "strain": "strain=DSM 25623", "accession": "GCA_003814555.1", "taxid": 1273429, "species_taxid": 1273429, "relation_to_type": "type", "validated": true, "ani": 79.48, "matched_fragments": 417, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas wenzhouensis", "strain": "strain=YD-1", "accession": "GCA_007859305.1", "taxid": 2599615, "species_taxid": 2599615, "relation_to_type": "type", "validated": true, "ani": 79.3122, "matched_fragments": 389, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter maris", "strain": "strain=KCTC 42381", "accession": "GCA_006546735.2", "taxid": 1605891, "species_taxid": 1605891, "relation_to_type": "type", "validated": true, "ani": 79.2179, "matched_fragments": 347, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas marina", "strain": "strain=FR1330", "accession": "GCA_007859325.1", "taxid": 488485, "species_taxid": 488485, "relation_to_type": "type", "validated": true, "ani": 79.0567, "matched_fragments": 411, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas haemolytica", "strain": "strain=LMG 19653", "accession": "GCA_006352395.1", "taxid": 141949, "species_taxid": 141949, "relation_to_type": "type", "validated": true, "ani": 79.0416, "matched_fragments": 334, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 79.0391, "matched_fragments": 328, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 79.0159, "matched_fragments": 356, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vulcaniibacterium thermophilum", "strain": "strain=KCTC 32020", "accession": "GCA_014656335.1", "taxid": 1169913, "species_taxid": 1169913, "relation_to_type": "type", "validated": true, "ani": 78.9792, "matched_fragments": 387, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas koreensis", "strain": "strain=KCTC 12208", "accession": "GCA_010093225.1", "taxid": 266061, "species_taxid": 266061, "relation_to_type": "type", "validated": true, "ani": 78.973, "matched_fragments": 346, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas caeni", "strain": "strain=z29", "accession": "GCA_003024235.1", "taxid": 2058085, "species_taxid": 2058085, "relation_to_type": "type", "validated": true, "ani": 78.9349, "matched_fragments": 425, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas malthae", "strain": "strain=CC-JY-1", "accession": "GCA_000747075.1", "taxid": 354197, "species_taxid": 354197, "relation_to_type": "type", "validated": true, "ani": 78.9091, "matched_fragments": 375, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas jiangsuensis", "strain": "strain=DSM 22398", "accession": "GCA_010093185.1", "taxid": 619688, "species_taxid": 619688, "relation_to_type": "type", "validated": true, "ani": 78.9079, "matched_fragments": 394, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonas aquatica", "strain": "strain=SY21", "accession": "GCA_006337105.1", "taxid": 2202149, "species_taxid": 2202149, "relation_to_type": "type", "validated": true, "ani": 78.7443, "matched_fragments": 344, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas broegbernensis", "strain": "strain=DSM 12573", "accession": "GCA_014202435.1", "taxid": 83619, "species_taxid": 83619, "relation_to_type": "type", "validated": true, "ani": 78.7215, "matched_fragments": 386, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 78.7195, "matched_fragments": 380, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomonas massiliensis", "strain": "strain=SN8", "accession": "GCA_900018785.1", "taxid": 1720302, "species_taxid": 1720302, "relation_to_type": "type", "validated": true, "ani": 78.7182, "matched_fragments": 343, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 78.7122, "matched_fragments": 358, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas acidaminiphila", "strain": "strain=DSM 13117", "accession": "GCA_024221815.1", "taxid": 128780, "species_taxid": 128780, "relation_to_type": "type", "validated": true, "ani": 78.6782, "matched_fragments": 353, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas salinisoli", "strain": "strain=SJ-92", "accession": "GCA_013425525.1", "taxid": 2752307, "species_taxid": 2752307, "relation_to_type": "type", "validated": true, "ani": 78.602, "matched_fragments": 386, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas acidaminiphila", "strain": "strain=JCM 13310", "accession": "GCA_001431595.1", "taxid": 128780, "species_taxid": 128780, "relation_to_type": "type", "validated": true, "ani": 78.5468, "matched_fragments": 348, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dokdonella fugitiva", "strain": "strain=A3", "accession": "GCA_004342425.1", "taxid": 328517, "species_taxid": 328517, "relation_to_type": "type", "validated": true, "ani": 77.899, "matched_fragments": 323, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frateuria terrea", "strain": "strain=CGMCC 1.7053", "accession": "GCA_900115705.1", "taxid": 529704, 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"validated": true, "ani": 77.61, "matched_fragments": 235, "total_fragments": 942, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014202935.1", "gtdb_species": "s__Rehaibacterium terrae", "ani": 79.8552, "matched_fragments": 453, "total_fragments": 942, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Rehaibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008033445.1", "gtdb_species": "s__Vulcaniibacterium_B gelatinicum", "ani": 79.7269, "matched_fragments": 394, "total_fragments": 942, "gtdb_taxonomy": 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