{
    "type": "genome",
    "identifier": "GCA_026005135.1",
    "organism": "Leptospiraceae bacterium",
    "title": "Leptospiraceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "RIKEN-BRC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026005135.1",
        "bioproject": "PRJDB11609",
        "biosample": "SAMD00319453",
        "wgs_master": "BPKM00000000.1",
        "refseq_category": "na",
        "taxid": "2026757",
        "species_taxid": "2026757",
        "organism_name": "Leptospiraceae bacterium",
        "infraspecific_name": "",
        "isolate": "KatS3mg129",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/10/11",
        "asm_name": "ASM2600513v1",
        "submitter": "RIKEN-BRC",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/005/135/GCA_026005135.1_ASM2600513v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-10-11",
    "dateModified": "2022-10-11",
    "datePublished": "2022-10-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leptospiraceae bacterium"
        ],
        "sample_taxid": [
            "2026757"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Shizuoka, Higashi-izu, Arayu"
        ],
        "sample_host_location_id": [],
        "data_size": "0.906 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3418186",
        "Number of Sequences": "18",
        "Longest Sequences (bp)": "997935",
        "N50 (bp)": "512896",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "26.1",
        "Number of CDSs": "3299",
        "Average Protein Length": "309.6",
        "Coding Ratio (%)": "89.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "36",
        "Number of CRISPRs": "10"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "accession": "GCA_002006215.2",
                "taxid": 36839,
                "species_taxid": 36839,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 81,
                "total_fragments": 1132,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter cellanae",
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                "accession": "GCA_017569185.1",
                "taxid": 2818493,
                "species_taxid": 2818493,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9748,
                "matched_fragments": 85,
                "total_fragments": 1132,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tenacibaculum jejuense",
                "strain": "strain=type strain: KCTC 22618",
                "accession": "GCA_900198195.1",
                "taxid": 584609,
                "species_taxid": 584609,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9711,
                "matched_fragments": 62,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium massiliamazoniense",
                "strain": "strain=ND2",
                "accession": "GCA_001403635.1",
                "taxid": 1347366,
                "species_taxid": 1347366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9443,
                "matched_fragments": 93,
                "total_fragments": 1132,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium felsineum",
                "strain": "strain=DSM 793",
                "accession": "GCA_002006235.2",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9263,
                "matched_fragments": 92,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium canifelinum",
                "strain": "strain=FDAARGOS_1126",
                "accession": "GCA_016724785.1",
                "taxid": 285729,
                "species_taxid": 285729,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9216,
                "matched_fragments": 74,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter vadi",
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                "accession": "GCA_001761365.1",
                "taxid": 1774273,
                "species_taxid": 1774273,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8483,
                "matched_fragments": 73,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycoplasma capricolum subsp. capripneumoniae",
                "strain": "strain=type strain: F38 = NCTC 10192",
                "accession": "GCA_000953375.1",
                "taxid": 40480,
                "species_taxid": 2095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8362,
                "matched_fragments": 60,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polaribacter vadi",
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                "accession": "GCA_001680885.1",
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                "relation_to_type": "type",
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                "ani": 74.7253,
                "matched_fragments": 71,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium tertium",
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                "accession": "GCA_017873245.1",
                "taxid": 1559,
                "species_taxid": 1559,
                "relation_to_type": "type",
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                "matched_fragments": 71,
                "total_fragments": 1132,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "strain_heterogeneity": 0.0
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                "accession": "GCF_012569925.1",
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                "total_fragments": 1132,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales_A;f__Enterobacteriaceae_A;g__GCA-012562765",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900128735.1",
                "gtdb_species": "s__Buchnera aphidicola_L",
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                "matched_fragments": 54,
                "total_fragments": 1132,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales_A;f__Enterobacteriaceae_A;g__Buchnera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012570145.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_000182945.1",
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                "num_clustered_genomes": 18,
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            },
            {
                "accession": "GCA_001880285.1",
                "gtdb_species": "s__UJ101 sp001880285",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__UJ101;g__UJ101",
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                "mean_intra_species_ani": "N/A",
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            },
            {
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                "accession": "GCA_904419495.1",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.8,
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        "growth_tmp": 29.8,
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        "bacillus_cell_shape": 0.166,
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    "_gtdb_taxon": [
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        "c__Leptospirae",
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    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
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        "o__Leptospirales",
        "f__Leptonemataceae",
        "g__SKYB61",
        "s__SKYB61 sp026005135",
        "Bacteria",
        "Spirochaetota",
        "Leptospirae",
        "Leptospirales",
        "Leptonemataceae",
        "SKYB61",
        "SKYB61",
        "sp026005135"
    ],
    "_meo": [
        {
            "id": "MEO_0000029",
            "label": "hot spring"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}