{ "type": "genome", "identifier": "GCA_026005175.1", "organism": "Candidatus Tectomicrobia bacterium", "title": "Candidatus Tectomicrobia bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "RIKEN-BRC", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026005175.1", "bioproject": "PRJDB11609", "biosample": "SAMD00319455", "wgs_master": "BPKO00000000.1", "refseq_category": "na", "taxid": "2528274", "species_taxid": "2528274", "organism_name": "Candidatus Tectomicrobia bacterium", "infraspecific_name": "", "isolate": "KatS3mg131", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/10/11", "asm_name": "ASM2600517v1", "submitter": "RIKEN-BRC", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/005/175/GCA_026005175.1_ASM2600517v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-10-11", "dateModified": "2022-10-11", "datePublished": "2022-10-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Tectomicrobia bacterium" ], "sample_taxid": [ "2528274" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan:Shizuoka, Higashi-izu, Arayu" ], "sample_host_location_id": [], "data_size": "1.095 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 54.17, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3990742", "Number of Sequences": "14", "Longest Sequences (bp)": "1123235", "N50 (bp)": "357396", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.8", "Number of CDSs": "4126", "Average Protein Length": "291.6", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Inmirania thermothiophila", "strain": "strain=DSM 100275", "accession": "GCA_003751635.1", "taxid": 1750597, "species_taxid": 1750597, "relation_to_type": "type", "validated": true, "ani": 75.6084, "matched_fragments": 126, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=J1A", "accession": "GCA_003967275.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 75.3755, "matched_fragments": 50, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalimonas asiatica", "strain": "strain=CGMCC 1.6291", "accession": "GCA_900110585.1", "taxid": 406100, "species_taxid": 406100, "relation_to_type": "type", "validated": true, "ani": 75.3288, "matched_fragments": 54, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arhodomonas aquaeolei", "strain": "strain=DSM 8974", "accession": "GCA_000374645.1", "taxid": 2369, "species_taxid": 2369, "relation_to_type": "type", "validated": true, "ani": 75.2232, "matched_fragments": 63, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metallibacterium scheffleri", "strain": "strain=DKE6", "accession": "GCA_002077135.1", "taxid": 993689, "species_taxid": 993689, "relation_to_type": "type", "validated": true, "ani": 75.1659, "matched_fragments": 56, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metallibacterium scheffleri", "strain": "strain=DSM 24874", "accession": "GCA_004798955.1", "taxid": 993689, "species_taxid": 993689, "relation_to_type": "type", "validated": true, "ani": 75.1659, "matched_fragments": 56, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodanobacter denitrificans", "strain": "strain=2APBS1", "accession": "GCA_000230695.3", "taxid": 666685, "species_taxid": 666685, "relation_to_type": "type", "validated": true, "ani": 75.1042, "matched_fragments": 88, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus albicereus", "strain": "strain=UniB2", "accession": "GCA_012676905.1", "taxid": 2726185, "species_taxid": 2726185, "relation_to_type": "type", "validated": true, "ani": 74.9877, "matched_fragments": 53, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas padinae", "strain": "strain=KCTC 52403", "accession": "GCA_014652935.1", "taxid": 1714359, "species_taxid": 1714359, "relation_to_type": "type", "validated": true, "ani": 74.9822, "matched_fragments": 76, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter agri", "strain": "strain=G-1-2-2", "accession": "GCA_012927085.1", "taxid": 2728837, "species_taxid": 2728837, "relation_to_type": "type", "validated": true, "ani": 74.8773, "matched_fragments": 127, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea coxensis", "strain": "strain=DSM 45129", "accession": "GCA_019397265.1", "taxid": 404386, "species_taxid": 404386, "relation_to_type": "type", "validated": true, "ani": 74.7987, "matched_fragments": 131, "total_fragments": 1324, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 54.17, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000522425.1", "gtdb_species": "s__Entotheonella factor", "ani": 75.6742, "matched_fragments": 61, "total_fragments": 1324, "gtdb_taxonomy": "d__Bacteria;p__Tectomicrobia;c__Entotheonellia;o__Entotheonellales;f__Entotheonellaceae;g__Entotheonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004634385.1", "gtdb_species": "s__Thermaerobacter sp004634385", "ani": 75.4071, "matched_fragments": 73, "total_fragments": 1324, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_E;c__Thermaerobacteria;o__Thermaerobacterales;f__Thermaerobacteraceae;g__Thermaerobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_009772925.1", "gtdb_species": "s__PFJX01 sp009772925", "ani": 75.2996, "matched_fragments": 54, "total_fragments": 1324, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__PFJX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_005774545.1", "gtdb_species": "s__VAUL01 sp005774545", "ani": 75.2223, "matched_fragments": 64, "total_fragments": 1324, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__BM103;g__VAUL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016873935.1", "gtdb_species": "s__PFJX01 sp016873935", "ani": 75.1808, "matched_fragments": 60, "total_fragments": 1324, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Thiobacillaceae;g__PFJX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016720425.1", "gtdb_species": "s__CAIWHR01 sp016720425", "ani": 75.0734, "matched_fragments": 79, "total_fragments": 1324, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Casimicrobiaceae;g__CAIWHR01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_016192455.1", "gtdb_species": "s__JACPUC01 sp016192455", "ani": 74.9728, "matched_fragments": 76, "total_fragments": 1324, "gtdb_taxonomy": "d__Bacteria;p__JACPUC01;c__JACPUC01;o__JACPUC01;f__JACPUC01;g__JACPUC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015494165.1", "gtdb_species": "s__S144-34 sp015494165", "ani": 74.8868, "matched_fragments": 88, "total_fragments": 1324, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__S144-34;f__S144-34;g__S144-34", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003697015.1", "gtdb_species": "s__J023 sp003697015", "ani": 74.8738, "matched_fragments": 115, "total_fragments": 1324, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__UBA5704;f__UBA5704;g__J023", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002432195.1", "gtdb_species": "s__UBA5852 sp002432195", "ani": 74.8071, "matched_fragments": 60, "total_fragments": 1324, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA5852;g__UBA5852", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Tectomicrobia", "c__Entotheonellia", "o__Entotheonellales", "f__Entotheonellaceae", "g__BPKO01", "s__BPKO01 sp026005175" ], "_genome_taxon": [ "Candidatus", "Tectomicrobia", "bacterium", "d__Bacteria", "p__Tectomicrobia", "c__Entotheonellia", "o__Entotheonellales", "f__Entotheonellaceae", "g__BPKO01", "s__BPKO01 sp026005175", "Bacteria", "Tectomicrobia", "Entotheonellia", "Entotheonellales", "Entotheonellaceae", "BPKO01", "BPKO01", "sp026005175" ], "_meo": [ { "id": "MEO_0000029", "label": "hot spring" }, { "id": "MEO_0000066", "label": "sediment" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }