{
    "type": "genome",
    "identifier": "GCA_026041435.1",
    "organism": "Candidatus Thiodiazotropha lotti",
    "title": "Candidatus Thiodiazotropha lotti",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of California, Davis",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026041435.1",
        "bioproject": "PRJNA679177",
        "biosample": "SAMN30613309",
        "wgs_master": "JAPDXA000000000.1",
        "refseq_category": "na",
        "taxid": "2792787",
        "species_taxid": "2792787",
        "organism_name": "Candidatus Thiodiazotropha lotti",
        "infraspecific_name": "",
        "isolate": "KOTO2_Th1",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/07",
        "asm_name": "ASM2604143v1",
        "submitter": "University of California, Davis",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/041/435/GCA_026041435.1_ASM2604143v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-07",
    "dateModified": "2022-11-07",
    "datePublished": "2022-11-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Thiodiazotropha lotti"
        ],
        "sample_taxid": [
            "2792787"
        ],
        "sample_host_organism": [
            "Loripes orbiculatus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Montenegro: Kotor"
        ],
        "sample_host_location_id": [],
        "data_size": "1.305 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.15,
        "contamination": 0.84,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4524820",
        "Number of Sequences": "864",
        "Longest Sequences (bp)": "36522",
        "N50 (bp)": "7015",
        "Gap Ratio (%)": "0.005304",
        "GCcontent (%)": "51.6",
        "Number of CDSs": "3367",
        "Average Protein Length": "279.7",
        "Coding Ratio (%)": "62.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sedimenticola thiotaurini",
                "strain": "strain=SIP-G1",
                "accession": "GCA_001007875.1",
                "taxid": 1543721,
                "species_taxid": 1543721,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4593,
                "matched_fragments": 76,
                "total_fragments": 1073,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allochromatium vinosum",
                "strain": "strain=DSM 180",
                "accession": "GCA_000025485.1",
                "taxid": 1049,
                "species_taxid": 1049,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.747,
                "matched_fragments": 50,
                "total_fragments": 1073,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marichromatium gracile",
                "strain": "strain=DSM 203",
                "accession": "GCA_016583515.1",
                "taxid": 1048,
                "species_taxid": 1048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5626,
                "matched_fragments": 50,
                "total_fragments": 1073,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.15,
            "contamination": 0.84,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_001709035.1",
                "gtdb_species": "s__Thiodiazotropha endoloripes_B",
                "ani": 99.258,
                "matched_fragments": 997,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.26",
                "min_intra_species_ani": "97.31",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 11,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001708965.1",
                "gtdb_species": "s__Thiodiazotropha endoloripes",
                "ani": 91.8041,
                "matched_fragments": 913,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.62",
                "min_intra_species_ani": "99.43",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_016842065.1",
                "gtdb_species": "s__Thiodiazotropha sp016842065",
                "ani": 88.8656,
                "matched_fragments": 878,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003676145.1",
                "gtdb_species": "s__Thiodiazotropha endolucinida",
                "ani": 88.6021,
                "matched_fragments": 882,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.91",
                "min_intra_species_ani": "96.39",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 26,
                "status": "-"
            },
            {
                "accession": "GCA_019100305.1",
                "gtdb_species": "s__Thiodiazotropha sp019100305",
                "ani": 88.4727,
                "matched_fragments": 721,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003058495.1",
                "gtdb_species": "s__Thiodiazotropha sp003058495",
                "ani": 77.9023,
                "matched_fragments": 255,
                "total_fragments": 1073,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Thiodiazotropha",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.61",
                "min_intra_species_ani": "99.54",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Chromatiales",
        "f__Sedimenticolaceae",
        "g__Thiodiazotropha",
        "s__Thiodiazotropha lotti"
    ],
    "_genome_taxon": [
        "Candidatus",
        "Thiodiazotropha",
        "lotti",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Chromatiales",
        "f__Sedimenticolaceae",
        "g__Thiodiazotropha",
        "s__Thiodiazotropha lotti",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Chromatiales",
        "Sedimenticolaceae",
        "Thiodiazotropha",
        "Thiodiazotropha",
        "lotti"
    ],
    "_meo": [
        {
            "id": "MEO_0000420",
            "label": "symbiotic microbe"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}