{
    "type": "genome",
    "identifier": "GCA_026126045.1",
    "organism": "Shinella sp.",
    "title": "Shinella sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "The University of Hong Kong",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_026126045.1",
        "bioproject": "PRJNA728822",
        "biosample": "SAMN19104389",
        "wgs_master": "JAHCKA000000000.1",
        "refseq_category": "na",
        "taxid": "1870904",
        "species_taxid": "1870904",
        "organism_name": "Shinella sp.",
        "infraspecific_name": "",
        "isolate": "TGS_PRO16",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/11/10",
        "asm_name": "ASM2612604v1",
        "submitter": "The University of Hong Kong",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/126/045/GCA_026126045.1_ASM2612604v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-11-10",
    "dateModified": "2022-11-10",
    "datePublished": "2022-11-10",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Shinella sp."
        ],
        "sample_taxid": [
            "1870904"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Hong Kong"
        ],
        "sample_host_location_id": [],
        "data_size": "2.125 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "7754986",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "1013428",
        "N50 (bp)": "351572",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.1",
        "Number of CDSs": "7549",
        "Average Protein Length": "305.4",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Shinella yambaruensis",
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                "species_taxid": 415996,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "conclusive"
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            {
                "organism_name": "Shinella granuli",
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                "accession": "GCA_004341885.1",
                "taxid": 323621,
                "species_taxid": 323621,
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "organism_name": "Shinella zoogloeoides",
                "strain": "strain=ATCC 19623",
                "accession": "GCA_020883495.1",
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                "species_taxid": 352475,
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                "total_fragments": 2562,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella zoogloeoides",
                "strain": "strain=DSM 287",
                "accession": "GCA_009826855.1",
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                "species_taxid": 352475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1836,
                "matched_fragments": 1239,
                "total_fragments": 2562,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella fusca",
                "strain": "strain=DSM 21319",
                "accession": "GCA_014203155.1",
                "taxid": 544480,
                "species_taxid": 544480,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9074,
                "matched_fragments": 1248,
                "total_fragments": 2562,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella curvata",
                "strain": "strain=C3",
                "accession": "GCA_022899935.1",
                "taxid": 1817964,
                "species_taxid": 1817964,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.4679,
                "matched_fragments": 1386,
                "total_fragments": 2562,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella pollutisoli",
                "strain": "strain=KCTC 52677",
                "accession": "GCA_024609765.1",
                "taxid": 2250594,
                "species_taxid": 2250594,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0919,
                "matched_fragments": 1177,
                "total_fragments": 2562,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella sumterensis",
                "strain": "strain=MEC087",
                "accession": "GCA_004514425.2",
                "taxid": 1967501,
                "species_taxid": 1967501,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8631,
                "matched_fragments": 1192,
                "total_fragments": 2562,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella oryzae",
                "strain": "strain=Z-25",
                "accession": "GCA_023038235.1",
                "taxid": 2871820,
                "species_taxid": 2871820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8013,
                "matched_fragments": 1179,
                "total_fragments": 2562,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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            {
                "accession": "GCF_004341885.1",
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                "total_fragments": 2562,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Shinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.18",
                "min_intra_species_ani": "98.18",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001262505.1",
                "gtdb_species": "s__Shinella sp001262505",
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                "matched_fragments": 1707,
                "total_fragments": 2562,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Shinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.95",
                "min_intra_species_ani": "98.39",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_016839145.1",
                "gtdb_species": "s__Shinella sp016839145",
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                "matched_fragments": 1368,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Shinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_009826855.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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                "status": "-"
            },
            {
                "accession": "GCF_014203155.1",
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                "matched_fragments": 1253,
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003574625.1",
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                "matched_fragments": 1316,
                "total_fragments": 2562,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002483305.1",
                "gtdb_species": "s__Brevundimonas sp002483305",
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                "matched_fragments": 203,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.317,
        "cell_length": 0.278,
        "doubling_h": null,
        "growth_tmp": 28.6,
        "optimum_tmp": 28.666,
        "optimum_ph": 7.0,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.75,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.25,
        "aerobic_respiration": 0.75,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
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        "f__Rhizobiaceae",
        "g__Shinella",
        "s__Shinella yambaruensis"
    ],
    "_genome_taxon": [
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        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Rhizobiales",
        "f__Rhizobiaceae",
        "g__Shinella",
        "s__Shinella yambaruensis",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Rhizobiales",
        "Rhizobiaceae",
        "Shinella",
        "Shinella",
        "yambaruensis"
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}