{ "type": "genome", "identifier": "GCA_026126065.1", "organism": "Bauldia sp.", "title": "Bauldia sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026126065.1", "bioproject": "PRJNA728822", "biosample": "SAMN19104387", "wgs_master": "JAHCJY000000000.1", "refseq_category": "na", "taxid": "2575872", "species_taxid": "2575872", "organism_name": "Bauldia sp.", "infraspecific_name": "", "isolate": "TGS_PRO15", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/10", "asm_name": "ASM2612606v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/126/065/GCA_026126065.1_ASM2612606v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-10", "dateModified": "2022-11-10", "datePublished": "2022-11-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Bauldia sp." ], "sample_taxid": [ "2575872" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hong Kong" ], "sample_host_location_id": [], "data_size": "0.946 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3458644", "Number of Sequences": "9", "Longest Sequences (bp)": "930905", "N50 (bp)": "595548", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.7", "Number of CDSs": "3406", "Average Protein Length": "299.1", "Coding Ratio (%)": "88.4", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kaistia adipata", "strain": "strain=DSM 17808", "accession": "GCA_000423225.1", "taxid": 166954, "species_taxid": 166954, "relation_to_type": "type", "validated": true, "ani": 77.7639, "matched_fragments": 303, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=SM30", "accession": "GCA_011317485.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 77.7451, "matched_fragments": 290, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobrevis albus", "strain": "strain=L22", "accession": "GCA_015904235.1", "taxid": 2793297, "species_taxid": 2793297, "relation_to_type": "type", "validated": true, "ani": 77.7222, "matched_fragments": 306, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia granuli", "strain": "strain=Ko04", "accession": "GCA_000380505.1", "taxid": 363259, "species_taxid": 363259, "relation_to_type": "type", "validated": true, "ani": 77.514, "matched_fragments": 256, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia hirudinis", "strain": "strain=DSM 25966", "accession": "GCA_014196455.1", "taxid": 1293440, "species_taxid": 1293440, "relation_to_type": "type", "validated": true, "ani": 77.5054, "matched_fragments": 291, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bauldia litoralis", "strain": "strain=ATCC 35022", "accession": "GCA_900104485.1", "taxid": 665467, "species_taxid": 665467, "relation_to_type": "type", "validated": true, "ani": 77.4459, "matched_fragments": 269, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 77.4013, "matched_fragments": 344, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chthonobacter albigriseus", "strain": "strain=KCTC 42450", "accession": "GCA_013839445.1", "taxid": 1683161, "species_taxid": 1683161, "relation_to_type": "type", "validated": true, "ani": 77.3793, "matched_fragments": 230, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter oerskovii", "strain": "strain=CCM 7435", "accession": "GCA_018390555.1", "taxid": 459519, "species_taxid": 459519, "relation_to_type": "type", "validated": true, "ani": 77.3793, "matched_fragments": 246, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_016653375.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 77.3719, "matched_fragments": 235, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_014197785.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 77.365, "matched_fragments": 232, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus composti", "strain": "strain=DSM 101465", "accession": "GCA_018398355.1", "taxid": 1743235, "species_taxid": 1743235, "relation_to_type": "type", "validated": true, "ani": 77.361, "matched_fragments": 196, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobium orientis", "strain": "strain=DSM 11290", "accession": "GCA_003258835.1", "taxid": 34017, "species_taxid": 34017, "relation_to_type": "type", "validated": true, "ani": 77.3582, "matched_fragments": 232, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus composti", "strain": "strain=CGMCC 1.15283", "accession": "GCA_014641535.1", "taxid": 1743235, "species_taxid": 1743235, "relation_to_type": "type", "validated": true, "ani": 77.3263, "matched_fragments": 187, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus composti", "strain": "strain=DSM 101465", "accession": "GCA_014201415.1", "taxid": 1743235, "species_taxid": 1743235, "relation_to_type": "type", "validated": true, "ani": 77.2958, "matched_fragments": 188, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 77.2893, "matched_fragments": 258, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter oligotrophus", "strain": "strain=DSM 25521", "accession": "GCA_003046185.1", "taxid": 1122261, "species_taxid": 1122261, "relation_to_type": "type", "validated": true, "ani": 77.27, "matched_fragments": 239, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistia soli", "strain": "strain=DSM 19436", "accession": "GCA_900129325.1", "taxid": 446684, "species_taxid": 446684, "relation_to_type": "type", "validated": true, "ani": 77.2472, "matched_fragments": 231, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 77.2186, "matched_fragments": 235, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureimonas leprariae", "strain": "strain=YIM 132180", "accession": "GCA_008802405.1", "taxid": 2615207, "species_taxid": 2615207, "relation_to_type": "type", "validated": true, "ani": 77.1651, "matched_fragments": 253, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gnaphalii", "strain": "strain=DSM 24027", "accession": "GCA_022179205.1", "taxid": 1010610, "species_taxid": 1010610, "relation_to_type": "type", "validated": true, "ani": 77.1526, "matched_fragments": 171, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 77.0743, "matched_fragments": 245, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium variabile", "strain": "strain=DSM 16961", "accession": "GCA_001043975.1", "taxid": 298794, "species_taxid": 298794, "relation_to_type": "type", "validated": true, "ani": 76.9062, "matched_fragments": 265, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 76.791, "matched_fragments": 294, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 76.7753, "matched_fragments": 278, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterovirga rhinocerotis", "strain": "strain=DSM 25903", "accession": "GCA_004363955.1", "taxid": 1339210, "species_taxid": 1339210, "relation_to_type": "type", "validated": true, "ani": 76.7159, "matched_fragments": 228, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 76.7158, "matched_fragments": 290, "total_fragments": 1148, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017305635.1", "gtdb_species": "s__Bauldia sp017305635", "ani": 77.9885, "matched_fragments": 308, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Bauldia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423225.1", "gtdb_species": "s__Kaistia adipata", "ani": 77.7863, "matched_fragments": 301, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015904235.1", "gtdb_species": "s__L22 sp015904235", "ani": 77.7026, "matched_fragments": 308, "total_fragments": 1148, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Chelatococcus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.72", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_017872635.1", "gtdb_species": "s__Starkeya sp017872635", "ani": 77.2627, "matched_fragments": 259, "total_fragments": 1148, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Starkeya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900129325.1", "gtdb_species": "s__Kaistia soli", "ani": 77.2389, "matched_fragments": 229, "total_fragments": 1148, "gtdb_taxonomy": 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