{ "type": "genome", "identifier": "GCA_026129795.1", "organism": "Propionibacteriaceae bacterium", "title": "Propionibacteriaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "The University of Hong Kong", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026129795.1", "bioproject": "PRJNA728822", "biosample": "SAMN19104316", "wgs_master": "JAHCHK000000000.1", "refseq_category": "na", "taxid": "2021380", "species_taxid": "2021380", "organism_name": "Propionibacteriaceae bacterium", "infraspecific_name": "", "isolate": "TGS_ACT3", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/10", "asm_name": "ASM2612979v1", "submitter": "The University of Hong Kong", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/129/795/GCA_026129795.1_ASM2612979v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-10", "dateModified": "2022-11-10", "datePublished": "2022-11-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Propionibacteriaceae bacterium" ], "sample_taxid": [ "2021380" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hong Kong" ], "sample_host_location_id": [], "data_size": "1.143 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 73.2, "contamination": 0.46, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4108071", "Number of Sequences": "1258", "Longest Sequences (bp)": "31606", "N50 (bp)": "4179", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.0", "Number of CDSs": "2642", "Average Protein Length": "287.8", "Coding Ratio (%)": "55.5", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Propionicimonas paludicola", "strain": "strain=DSM 15597", "accession": "GCA_002563675.1", "taxid": 185243, "species_taxid": 185243, "relation_to_type": "type", "validated": true, "ani": 79.0743, "matched_fragments": 207, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava coleopterorum", "strain": "strain=HDW11", "accession": "GCA_011393335.1", "taxid": 2714937, "species_taxid": 2714937, "relation_to_type": "type", "validated": true, "ani": 78.4174, "matched_fragments": 193, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava soli", "strain": "strain=YIM S02567", "accession": "GCA_014858005.1", "taxid": 2775081, "species_taxid": 2775081, "relation_to_type": "type", "validated": true, "ani": 78.328, "matched_fragments": 192, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariimicrobium ganziense", "strain": "strain=YIM S02566", "accession": "GCA_015352975.1", "taxid": 2773677, "species_taxid": 2773677, "relation_to_type": "type", "validated": true, "ani": 78.0326, "matched_fragments": 158, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Auraticoccus monumenti", "strain": "strain=MON 2.2", "accession": "GCA_900101785.1", "taxid": 675864, "species_taxid": 675864, "relation_to_type": "type", "validated": true, "ani": 77.8489, "matched_fragments": 149, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enemella evansiae", "strain": "strain=NML 020265", "accession": "GCA_002250705.1", "taxid": 2016499, "species_taxid": 2016499, "relation_to_type": "type", "validated": true, "ani": 77.5239, "matched_fragments": 147, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans brevis", "strain": "strain=16Sb5-5", "accession": "GCA_003327535.1", "taxid": 2268447, "species_taxid": 2268447, "relation_to_type": "type", "validated": true, "ani": 77.4564, "matched_fragments": 173, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava tarda", "strain": "strain=DSM 22130", "accession": "GCA_004324765.1", "taxid": 433330, "species_taxid": 433330, "relation_to_type": "type", "validated": true, "ani": 77.4276, "matched_fragments": 127, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava tarda", "strain": "strain=DSM 22130", "accession": "GCA_900182665.1", "taxid": 433330, "species_taxid": 433330, "relation_to_type": "type", "validated": true, "ani": 77.4235, "matched_fragments": 128, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertihabitans aurantiacus", "strain": "strain=CPCC 204711", "accession": "GCA_003344635.1", "taxid": 2282477, "species_taxid": 2282477, "relation_to_type": "type", "validated": true, "ani": 77.3314, "matched_fragments": 169, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Auraticoccus cholistanensis", "strain": "strain=F435", "accession": "GCA_009742705.1", "taxid": 2656650, "species_taxid": 2656650, "relation_to_type": "type", "validated": true, "ani": 77.2245, "matched_fragments": 181, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus defluvii", "strain": "strain=JCM 17540", "accession": "GCA_014489575.1", "taxid": 1285901, "species_taxid": 1285901, "relation_to_type": "type", "validated": true, "ani": 77.1521, "matched_fragments": 131, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Naumannella cuiyingiana", "strain": "strain=DSM 103164", "accession": "GCA_013408305.1", "taxid": 1347891, "species_taxid": 1347891, "relation_to_type": "type", "validated": true, "ani": 76.934, "matched_fragments": 129, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 76.6241, "matched_fragments": 104, "total_fragments": 724, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002563675.1", "gtdb_species": "s__Propionicimonas paludicola", "ani": 79.0293, "matched_fragments": 209, "total_fragments": 724, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionicimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002843035.1", "gtdb_species": "s__Propionicimonas sp002843035", "ani": 79.0053, "matched_fragments": 227, "total_fragments": 724, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Propionicimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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