{ "type": "genome", "identifier": "GCA_026169245.1", "organism": "Sutterella wadsworthensis", "title": "Sutterella wadsworthensis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "AnimalBiome", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026169245.1", "bioproject": "PRJNA893230", "biosample": "SAMN31537006", "wgs_master": "JAPFEC000000000.1", "refseq_category": "na", "taxid": "40545", "species_taxid": "40545", "organism_name": "Sutterella wadsworthensis", "infraspecific_name": "", "isolate": "bin_16_LilbubCat", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/14", "asm_name": "ASM2616924v1", "submitter": "AnimalBiome", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/169/245/GCA_026169245.1_ASM2616924v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-14", "dateModified": "2022-11-14", "datePublished": "2022-11-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Sutterella wadsworthensis" ], "sample_taxid": [ "40545" ], "sample_host_organism": [ "Felis catus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: CA" ], "sample_host_location_id": [], "data_size": "0.739 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2633318", "Number of Sequences": "140", "Longest Sequences (bp)": "150783", "N50 (bp)": "28070", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.8", "Number of CDSs": "2250", "Average Protein Length": "327.6", "Coding Ratio (%)": "84.0", "Number of rRNAs": "1", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sutterella parvirubra", "strain": "strain=YIT 11816", "accession": "GCA_000250875.1", "taxid": 437898, "species_taxid": 437898, "relation_to_type": "type", "validated": true, "ani": 79.94, "matched_fragments": 279, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutterella megalosphaeroides", "strain": "strain=6FBBBH3", "accession": "GCA_003609995.1", "taxid": 2494234, "species_taxid": 2494234, "relation_to_type": "type", "validated": true, "ani": 79.8868, "matched_fragments": 293, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutterella faecalis", "strain": "strain=KGMB03119", "accession": "GCA_006337085.1", "taxid": 2584944, "species_taxid": 2584944, "relation_to_type": "type", "validated": true, "ani": 79.0278, "matched_fragments": 233, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutterella wadsworthensis", "strain": "strain=FDAARGOS_1159", "accession": "GCA_016724805.1", "taxid": 40545, "species_taxid": 40545, "relation_to_type": "type", "validated": true, "ani": 77.8377, "matched_fragments": 137, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutterella wadsworthensis", "strain": "strain=DSM 14016", "accession": "GCA_003315195.1", "taxid": 40545, "species_taxid": 40545, "relation_to_type": "type", "validated": true, "ani": 77.7532, "matched_fragments": 141, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duodenibacillus massiliensis", "strain": "strain=Marseille-P2968", "accession": "GCA_900128485.1", "taxid": 1852381, "species_taxid": 1852381, "relation_to_type": "type", "validated": true, "ani": 77.679, "matched_fragments": 109, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodocyclus purpureus", "strain": "strain=DSM 168", "accession": "GCA_016653115.1", "taxid": 1067, "species_taxid": 1067, "relation_to_type": "type", "validated": true, "ani": 77.0876, "matched_fragments": 72, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia gladioli", "strain": "strain=NCTC12378", "accession": "GCA_900446225.1", "taxid": 28095, "species_taxid": 28095, "relation_to_type": "type", "validated": true, "ani": 76.5195, "matched_fragments": 82, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia gladioli", "strain": "strain=ATCC 10248", "accession": "GCA_000959725.1", "taxid": 28095, "species_taxid": 28095, "relation_to_type": "type", "validated": true, "ani": 76.4939, "matched_fragments": 81, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia gladioli", "strain": "strain=NBRC 13700", "accession": "GCA_000739755.1", "taxid": 28095, "species_taxid": 28095, "relation_to_type": "type", "validated": true, "ani": 76.4475, "matched_fragments": 82, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium commune", "strain": "strain=DSM 11901", "accession": "GCA_004362855.1", "taxid": 70586, "species_taxid": 70586, "relation_to_type": "type", "validated": true, "ani": 76.3693, "matched_fragments": 72, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Verticiella sediminum", "strain": "strain=DSM 27279", "accession": "GCA_007558815.1", "taxid": 1247510, "species_taxid": 1247510, "relation_to_type": "type", "validated": true, "ani": 76.3194, "matched_fragments": 84, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=NCTC5952", "accession": "GCA_900445785.1", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3186, "matched_fragments": 70, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=FDAARGOS_1541", "accession": "GCA_020735925.1", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3084, "matched_fragments": 69, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella parapertussis", "strain": "strain=FDAARGOS_177", "accession": "GCA_001525545.2", "taxid": 519, "species_taxid": 519, "relation_to_type": "suspected-type", "validated": true, "ani": 76.2632, "matched_fragments": 69, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinimonas koreensis", "strain": "strain=DSM 17726", "accession": "GCA_000428465.1", "taxid": 356302, "species_taxid": 356302, "relation_to_type": "type", "validated": true, "ani": 76.1771, "matched_fragments": 78, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia latens", "strain": "", "accession": "GCA_902499045.1", "taxid": 488446, "species_taxid": 488446, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1461, "matched_fragments": 104, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia niastensis", "strain": "strain=DSM 21313", "accession": "GCA_000382345.1", "taxid": 544911, "species_taxid": 544911, "relation_to_type": "type", "validated": true, "ani": 75.8867, "matched_fragments": 76, "total_fragments": 804, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000297775.1", "gtdb_species": "s__Sutterella wadsworthensis_A", "ani": 98.4027, "matched_fragments": 689, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCA_900764215.1", "gtdb_species": "s__Sutterella sp900764215", "ani": 87.3787, "matched_fragments": 494, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.09", "min_intra_species_ani": "99.09", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.76", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017936545.1", "gtdb_species": "s__Sutterella sp017936545", "ani": 81.0294, "matched_fragments": 281, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905215795.1", "gtdb_species": "s__Sutterella sp905215795", "ani": 80.3023, "matched_fragments": 224, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000250875.1", "gtdb_species": "s__Sutterella parvirubra", "ani": 79.9967, "matched_fragments": 276, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.34", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003609995.1", "gtdb_species": "s__Sutterella megalosphaeroides", "ani": 79.8685, "matched_fragments": 294, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905198475.1", "gtdb_species": "s__Sutterella sp905198475", "ani": 79.8244, "matched_fragments": 292, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900754475.1", "gtdb_species": "s__Sutterella sp900754475", "ani": 79.7691, "matched_fragments": 270, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.47", "min_intra_species_ani": "98.47", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_905186105.1", "gtdb_species": "s__Sutterella sp905186105", "ani": 79.6149, "matched_fragments": 174, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.93", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_905202595.1", "gtdb_species": "s__Sutterella sp905202595", "ani": 78.7389, "matched_fragments": 229, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905194315.1", "gtdb_species": "s__Sutterella sp905194315", "ani": 78.5729, "matched_fragments": 148, "total_fragments": 804, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sutterella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.155, "cell_length": 0.079, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": 2809530.25, "gc_content": 58.295, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Sutterella", "s__Sutterella wadsworthensis_A" ], "_genome_taxon": [ "Sutterella", "wadsworthensis", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__Burkholderiales", "f__Burkholderiaceae", "g__Sutterella", "s__Sutterella wadsworthensis_A", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "Burkholderiales", "Burkholderiaceae", "Sutterella", "Sutterella", "wadsworthensis", "A" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }