{ "type": "genome", "identifier": "GCA_026169415.1", "organism": "Robinsoniella sp.", "title": "Robinsoniella sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "AnimalBiome", "publication": [ {} ], "properties": { "assembly_accession": "GCA_026169415.1", "bioproject": "PRJNA893230", "biosample": "SAMN31536974", "wgs_master": "JAPFCW000000000.1", "refseq_category": "na", "taxid": "2496533", "species_taxid": "2496533", "organism_name": "Robinsoniella sp.", "infraspecific_name": "", "isolate": "bin_17_DannyCat", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/11/14", "asm_name": "ASM2616941v1", "submitter": "AnimalBiome", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/026/169/415/GCA_026169415.1_ASM2616941v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-11-14", "dateModified": "2022-11-14", "datePublished": "2022-11-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Robinsoniella sp." ], "sample_taxid": [ "2496533" ], "sample_host_organism": [ "Felis catus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: CA" ], "sample_host_location_id": [], "data_size": "0.718 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 72.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2539445", "Number of Sequences": "226", "Longest Sequences (bp)": "118892", "N50 (bp)": "17920", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.6", "Number of CDSs": "2135", "Average Protein Length": "318.4", "Coding Ratio (%)": "80.3", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hominisplanchenecus faecis", "strain": "strain=CLA-AA-H246", "accession": "GCA_020687205.1", "taxid": 2885351, "species_taxid": 2885351, "relation_to_type": "type", "validated": true, "ani": 78.9949, "matched_fragments": 79, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia argi", "strain": "strain=KCTC 15426", "accession": "GCA_003287895.1", "taxid": 1912897, "species_taxid": 1912897, "relation_to_type": "type", "validated": true, "ani": 76.705, "matched_fragments": 55, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jingyaoa shaoxingensis", "strain": "strain=NSJ-46", "accession": "GCA_014385005.1", "taxid": 2763671, "species_taxid": 2763671, "relation_to_type": "type", "validated": true, "ani": 76.7045, "matched_fragments": 61, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus phoceensis", "strain": "strain=Marseille-P3062", "accession": "GCA_900104635.1", "taxid": 1870993, "species_taxid": 1870993, "relation_to_type": "type", "validated": true, "ani": 76.6548, "matched_fragments": 70, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter massiliensis", "strain": "strain=Marseille-P2086", "accession": "GCA_001487105.1", "taxid": 1720300, "species_taxid": 1720300, "relation_to_type": "type", "validated": true, "ani": 76.1165, "matched_fragments": 51, "total_fragments": 733, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 72.92, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018366495.1", "gtdb_species": "s__JAGZHZ01 sp018366495", "ani": 99.764, "matched_fragments": 663, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__JAGZHZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_902363665.1", "gtdb_species": "s__Choladousia sp902363665", "ani": 80.2202, "matched_fragments": 68, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Choladousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.59", "min_intra_species_ani": "97.59", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902363685.1", "gtdb_species": "s__UMGS1375 sp900066615", "ani": 79.4093, "matched_fragments": 86, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UMGS1375", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "97.87", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.79", "num_clustered_genomes": 16, "status": "-" }, { "accession": "GCF_004123145.1", "gtdb_species": "s__Oliverpabstia faecicola", "ani": 77.1948, "matched_fragments": 65, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oliverpabstia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.72", "min_intra_species_ani": "97.58", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.80", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900540475.1", "gtdb_species": "s__Robinsoniella sp900540475", "ani": 77.1298, "matched_fragments": 77, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Robinsoniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900120295.1", "gtdb_species": "s__Blautia sp900120295", "ani": 76.955, "matched_fragments": 79, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018365455.1", "gtdb_species": "s__Robinsoniella sp900555455", "ani": 76.9499, "matched_fragments": 76, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Robinsoniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902363515.1", "gtdb_species": "s__Blautia sp000432195", "ani": 76.9069, "matched_fragments": 72, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.93", "min_intra_species_ani": "98.81", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.83", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_014385005.1", "gtdb_species": "s__Marvinbryantia sp014385005", "ani": 76.7071, "matched_fragments": 61, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Marvinbryantia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003287895.1", "gtdb_species": "s__Blautia argi", "ani": 76.705, "matched_fragments": 55, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.67", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003477525.1", "gtdb_species": "s__Blautia_A sp003477525", "ani": 76.6137, "matched_fragments": 66, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.30", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.81", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_900539655.1", "gtdb_species": "s__Robinsoniella sp900539655", "ani": 76.5502, "matched_fragments": 81, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Robinsoniella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900540785.1", "gtdb_species": "s__Blautia_A sp900540785", "ani": 76.4637, "matched_fragments": 61, "total_fragments": 733, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": 7391415.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__JAGZHZ01", "s__JAGZHZ01 sp018366495" ], "_genome_taxon": [ "Robinsoniella", "sp.", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__JAGZHZ01", "s__JAGZHZ01 sp018366495", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "JAGZHZ01", "JAGZHZ01", "sp018366495" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }